Running DAQ Interface » History » Version 78

John Freeman, 11/25/2014 02:33 PM

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h1. Getting help
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If, after reading this document (in particular, the "Troubleshooting and FAQ" section) you run into issues, or have questions, please contact:
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* DAQInterface
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** John Freeman -
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* RunControl
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** Erik Blaufuss -
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* Configuration Manager
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** Jon Paley -
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h1. Starting DAQInterface and Run Control
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The DAQ software, consisting of RunControl, the configuration manager and DAQInterface (as well as the artdaq processes it controls) is designed to be run on, using the lbnedaq account. If you need access to the account, please contact one of us.
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Primarily of developer (as opposed to user) interest, DAQInterface and RunControl software can also be run on the lbnedaqtest01 VM machine, please contact John Freeman at, for more details.
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The installed code is located at To get started, login and first setup the environment:
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cd /data/lbnedaq/scratch/DAQInterface
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source fireup
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This will take you into the /data/lbnedaq/scratch/DAQInterface/lbnerc directory. It's a good idea to check whether lbnecontrol (the RunControl application), DAQInterface (the component which intermediates between RunControl, the configuration manager, and the artdaq processes) and the configuration manager are already running; if they aren't, the instructions below won't work. Also worth noting is that as of 11/21/14, attempts to use multiple DAQs (implying multiple instances of RunControl, DAQInterface, etc.) has not been attempted and likely will not work. To check for RunControl and DAQInterface, you can try:
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lbnecmd check
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This will display the current state of DAQInterface and RunControl. The example below shows that both RunControl and DAQInterface are running, but the DAQ run is in the stopped state:
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(env)[lbnedaq@lbne35t-gateway01 lbnerc]$ lbnecmd check
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lbnecontrol: running
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daqint@localhost:5770 (synchronous): stopped
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If RunControl is running, and at some point DAQInterface was running but has since been killed:
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lbnecontrol: running
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daqint@localhost:5770 (synchronous): missing
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(In this case, just restart DAQInterface).
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If RunControl is not running, you'll see something like:
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(env)[lbnedaq@lbne35t-gateway01 lbnerc]$ lbnecmd check
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check failed: '[Errno 111] Connection refused'.  Is lbnecontrol running?
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To check whether the configuration manager is running, you can simply use Linux commands:
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ps aux | grep -v grep | grep CfgMgrApp
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This will either return info on the CfgMgrApp process, or print nothing if it's not running. In fact, it's possible to use Linux commands to check the status of all three programs:
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ps aux | grep -v grep | egrep -e lbnecontrol -e daqinterface -e CfgMgrApp
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h3. Starting RunControl
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To start RunControl (after loading environment as above):
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rm /tmp/  # (This should only be necessary of RunControl software wasn't stopped cleanly)
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lbnecmd launch
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h3. Starting DAQInterface
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To start DAQInterface (after loading environment as above), the basic command is:
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daqinterface -n daqint -r 5570 -c localhost -H localhost &
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However, particularly if multiple users with different terminals wish to check the DAQ output, it is recommended to try:
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stdbuf -oL daqinterface -n daqint -r 5570 -c localhost -H localhost >>~/DI.log 2>&1 &
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This will launch daqinterface in the background, with all messages being collected (appended to the bottom of...) in the file ~/DI.log  (The stdbuf -oL prevents and buffering of output to the file)
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Here, the "daqint" argument is arbitrary, and is the name you'll give the DAQInterface process in RunControl; the "5570" argument is the port off of which DAQInterface will run.
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h3. Starting the configuration manager
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Please see Jon Paley's documentation here:
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h3. Forcing cleanup: performing a hard reset of RunControl, DAQInterface and the configuration manager
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If needed, you can track down the process names and kill them explicitly to get a clean reset:
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ps aux | grep -v grep | grep lbnecontrol
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ps aux | grep -v grep | grep daqinterface
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ps aux | grep -v grep | grep CfgMgrApp
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If these processes are running, it either means that someone else is using the DAQ, or that someone else who's done using it forgot to clean up. As the 9th and 10th fields of the row of variables "ps aux" returns concern how long the program has been running, you can use these values as well as your best judgement, then, before deciding these processes are not in active use and killing them.   To kill them, the second field returned from "ps aux" is the process id (PID), use:
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kill <PID>
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If daqinterface is killed externally, then if it was in any state other than "stopped" at the time (and it likely was, otherwise a hard reset would likely have been avoidable), it's quite possible that it's left "orphaned" artdaq processes. If this is the case, you'll want to clean these up before trying to run the DAQ again, as they'll block the ports if they remain alive as "zombie" processes. Check the config.txt file to see which node the PMT (Process Management Tool) was running on, and check for it with
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ps aux | grep -v grep | grep pmt.rb
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Use this to get the process ID to kill it. Of course, also be aware that if artdaq processes were in communication with hardware when the orphaning occurred, killing them off might result in issues for the hardware, but the specifics of any hardware issues that may arise go beyond the scope of this document.
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h1. Configuring and starting Runs
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Now, you can take the DAQ system through the standard transitions to start a DAQ run.  At all stages, you can use the "lbnecmd check" command to see what state DAQInterface is in; note that you'll want to wait for a transition to complete before issuing another one, otherwise you'll receive a warning and the transition request will be ignored. DAQInterface will also report to its log file when transitions are complete:
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Initialize transition complete; if running DAQInterface in the background, can press <enter> to return to shell prompt
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Note that if a high "debug level" has been set (see below for more on this), this message can get buried in a set of output messages; in this case "lbnecmd check" may be the easiest way to determine what state the system is in. 
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h2.  Selecting a configuration and DAQ components
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*Before initializing or starting a DAQ run*, a configuration and set of DAQComponents must be selected.  This is done via RunControl.
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h3. List and select a configuration:
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To see the list of available configurations (queried from the configuration manager):
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lbnecmd listconfigs
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Will return a list of configs:
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Available configs (Name : description)
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demo : Pithy description
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tmp1 : Pithy description
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Current selected config: No Config
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This lists all available configs, as well as the current selected config (Note, default config is "No Config").  You can then select a configuration:
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lbnecmd setconfig demo
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This will return "OK" if successful; "lbnecmd listconfigs" will then show this as the current config.  If the specified configuration is not known, an error is returned.
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h3. List and select DAQ components.
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You can select which portions of the LBNE DAQ setup you want to use in the upcoming run.  These are mapped generally to the ArtDAQ BoardReaderMain processes
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that read them out.   As an operator, you need to ensure that there are configuration files available in the configuration manager for the DAQ Components that you select here,
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or DAQInterface will return an error.
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To see the list of available DAQ components:
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lbnecmd listdaqcomps
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Will return a list of components available and selected (*Default* is ALL available components), e.g.:
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{'available': {'component02': ['lbnedaq2', '5206'], 'component01': ['lbnedaq2', '5205']}}
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{'selected': {'component02': ['lbnedaq2', '5206'], 'component01': ['lbnedaq2', '5205']}}
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Shown are the available components by name, along with the requested host/port to run the BoardReaderMain process on. You can then select a list of DAQ components to use in the run:
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lbnecmd setdaqcomps component01 component02
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This will return "OK" if successful ("lbnecmd listdaqcomps" will show this in the "selected" row of components).  If the specified compnents are not known, an error is returned.
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To change the list of available components, see below.
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h2. Configuring, starting, stopping and terminating a Run
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For each of these transitions, please recall that while "lbnecmd <cmd>" returns very quickly, the actual issued command can take several seconds or minutes to complete.  Before issuing another command, be sure that the transition is complete by using the check command:
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lbnecmd check
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For example, before issuing the "start" transition, you can use this command to ensure that the DAQ is in the "ready" state and not still in the "initializing" stage.
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First, take DAQInterface from the "stopped" to the "ready" state; this will create the artdaq processes on the hosts you selected (DAQ components), and initialize them with the FHiCL configuration:
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lbnecmd init daq
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Take DAQInterface from the "ready" to the "running" state, in order to begin taking data:
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lbnecmd start daq
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Note: the current run number is displayed when DAQ is in the running state using the "lbnecmd check" command:
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lbnecmd check
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lbnecontrol: running
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Run number: 207
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Run configuration: demo
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daqint@localhost:5570 (synchronous): running
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Pause the running of the DAQ, putting DAQInterface into the "paused" state.  This will cause the current open output file to be closed and given a name reflecting the current run number:
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lbnecmd pause daq
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Resume the running of the DAQ, putting returning to the "running" state.  This will restart data taking to a new output file:
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lbnecmd resume daq
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Halt the running of the DAQ, returning DAQInterface to the "ready" state from the "running" state:
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lbnecmd stop daq
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From the ready state, you can start a new run with the same configuration and DAQ components you originally selected. 
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*NOTE* To select a new configuration or DAQ component set, you must kill all ArtDAQ processes and return DAQInterface to its "stopped" state with the "terminate" command:
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lbnecmd terminate daq
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If you want to stop all RunControl processes (known as "lbnecontrol"):
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lbnecmd kill
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After this, you will need to relaunch RunControl as above.
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h2. After your DAQ run.
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Once you've completed your run, there are a few things you can look at. 
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h3. The DAQ log
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A record of the DAQ's output will be saved in the subdirectory pmt/ relative to where you specified the output logfiles; thus given the "log directory" setting in the example config.txt below, you'd find the output in /data/lbnedaq/daqlogs/pmt/. 
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h3. The run record
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Also, a record of the FHiCL documents sent to the artdaq processes, the config.txt file used to control DAQInterface, and some further information will have been saved; as of this writing (11/12/14) the directory in which this can be found defaults to /data/lbnedaq/scratch/jcfree/TemporarySaveArea/<run number>, although as you might imagine the plan is to eventually change this directory. 
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** PLEASE NOTE that there may be slight differences between the saved FHiCL documents and the FHiCL documents specified in config.txt and/or provided by the choice of configuration. The saved FHiCL document name is standardized to <processtype>_<host>_<port>_r<run number>.fcl, so, e.g, "Aggregator_lbnedaq2_5266_r192.fcl" would be the saved name of /data/lbnedaq/fcl/Aggregator_lbnedaq2_2.fcl, listed in the example config.txt file above, assuming datataking was performed in run 192. 
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** More importantly, the FHiCL document actually sent to the artdaq process may be slightly different than the FHiCL document provided for DAQInterface; this is because DAQInterface performs some bookkeeping on FHiCL variables which account for things such as the number of processes of a given type (note that it makes no changes which would affect the physics). It is this post-bookkeeping FHiCL document which actually gets sent to the processes which gets saved to the output directory. 
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** The "further information" mentioned above is stored in a file of the form "metadata_r<run number>.txt"; it includes the configuration chosen for the run, the components used, as well as the commit hashes for the lbne-artdaq, lbnerc, and configuration directory used. E.g.,
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Config name: demo
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Component #0: component01
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Component #1: component02
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lbne-artdaq commit: 13b523181a6f8ff6e78ede590d6372ed6193c79c
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lbnerc commit: 288001cf015e1a763dbba482923fc7ac8f379ae6
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/data/lbnedaq/config commit: 877e43fe3ad96991adf5d57dbfbdefb6300fde25
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h3. The Art output
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Output of the Art modules. Various Art modules may create various types of output. In particular, it's standard for one of the two AggregatorMains running in an artdaq-based DAQ to use Art's RootOutput module, which will save the assembled raw event in an Art-readable *.root file. The location of this output can be found in the FHiCL code used to control RootOutput. The other AggregatorMain typically will run other RootOutput modules designed to create plots, diagnostic printouts, etc.; the nature of the output here is too varied to neatly summarize, but checking the FHiCL code used to control these Art modules should reveal their output location.
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To take a quick look at the Art-readable *.root file, with a version of lbne-artdaq newer than 11/25/14, you can do the following:
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cd <lbne-artdaq basedir>
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source setupLBNEARTDAQ
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rawEventDump -s <rootfile> -n <max events>
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where here, <lbne-artdaq basedir> is the parent directory of the lbne-artdaq package, <rootfile> is the Art-readable *.root file produced in a given run, and <max events> is the max events whose info you wish to look at. The output of this command will look something like the following:
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%MSG-i MF_INIT_OK:  art 25-Nov-2014 14:04:55 CST JobSetup 
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Messagelogger initialization complete.
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%MSG-i PathConfiguration:  art 25-Nov-2014 14:04:55 CST JobSetup 
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Multiple end paths have been combined into one end path,
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"end_path" since order is irrelevant.
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25-Nov-2014 14:04:55 CST  Initiating request to open file /tmp/lbne35t_r000264_sr01_20141125T193332.root
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25-Nov-2014 14:04:56 CST  Successfully opened file /tmp/lbne35t_r000264_sr01_20141125T193332.root
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Package             |Version             |Timestamp           
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artdaq-core         |v1_04_06            |25-Nov-2014 19:27:44 UTC
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artdaq              |v1_12_04            |25-Nov-2014 19:29:42 UTC
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lbne-artdaq         |v0_00_07            |25-Nov-2014 19:28:11 UTC
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lbne-artdaq         |v0_06_00            |25-Nov-2014 19:30:43 UTC
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Begin processing the 1st record. run: 264 subRun: 1 event: 1 at 25-Nov-2014 14:04:56 CST
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DAQ......... | daq........... | TOY1................. | std::vector<artdaq::Fragment> | artdaq::Fragments.... | ...1
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DAQ......... | daq........... | PHOTON............... | std::vector<artdaq::Fragment> | artdaq::Fragments.... | ...?
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DAQ......... | daq........... | TPC.................. | std::vector<artdaq::Fragment> | artdaq::Fragments.... | ...?
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DAQ......... | daq........... | missed............... | std::vector<artdaq::Fragment> | artdaq::Fragments.... | ...?
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DAQ......... | daq........... | unidentified......... | std::vector<artdaq::Fragment> | artdaq::Fragments.... | ...?
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DAQ......... | daq........... | TOY2................. | std::vector<artdaq::Fragment> | artdaq::Fragments.... | ...1
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DAQ......... | daq........... | TRIGGER.............. | std::vector<artdaq::Fragment> | artdaq::Fragments.... | ...?
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DAQAG....... | TriggerResults | ..................... | art::TriggerResults.......... | art::TriggerResults.. | ...-
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Total products (present, not present): 8 (3, 5).
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DAQAG....... | BuildInfo... | LbneArtdaq........... | std::vector<artdaq::PackageBuildInfo> | artdaq::PackageBuildInfos | ...4
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Total products (present, not present): 1 (1, 0).
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25-Nov-2014 14:04:56 CST  Closed file /tmp/lbne35t_r000264_sr01_20141125T193332.root
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TrigReport ---------- Event  Summary ------------
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TrigReport Events total = 1 passed = 1 failed = 0
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TrigReport ------ Modules in End-Path: end_path ------------
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TrigReport  Trig Bit#    Visited     Passed     Failed      Error Name
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TrigReport     0    0          1          1          0          0 printBuildInfo
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TrigReport     0    0          1          1          0          0 out1
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TimeReport ---------- Time  Summary ---[sec]----
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TimeReport CPU = 0.003590 Real = 0.002999
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Art has completed and will exit with status 0.
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The first thing you see here is the version and build time of the lbne-artdaq package and some of the main packages on which it depends. Then you see a listing of products, some of which are shown to be available (in this case, TOY1 and TOY2, simulated fragments from the ToySimulator fragment generator). Finally, a listing of passed events; the output here is the result of running with "-n 1" as an option, so as we'd expect there's only one event. 
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h1. Configuring DAQInterface
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DAQInterface has some key information stored in a local configuration file (location and ports for EventBuilders, Aggregators, location of artDAQ, log level, etc). These can be changed while DAQInterface is not running,  It's expected that for normal operations, these should not need to changed too often. Assuming the processes aren't running, before getting started, take a look at the configuration file, found in docs/config.txt (relative to /data/lbnedaq/scratch/DAQInterface/lbnerc). 
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It should look something like the following:
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lbne-artdaq: /data/lbnedaq/scratch/DAQInterface/build_lbne-artdaq
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PMT host: lbnedaq3
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pause before initialization: 5
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# debug level can range from 0 to 3 (increasing order of verbosity)
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debug level: 1
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log directory:   /data/lbnedaq/daqlogs
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record directory: /data/lbnedaq/scratch/jcfree/TemporarySaveArea/
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 EventBuilder host: lbnedaq2
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 EventBuilder port: 5235
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 EventBuilder fhicl: /data/lbnedaq/fcl/EventBuilder_demo1.fcl
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 EventBuilder host: lbnedaq2
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 EventBuilder port: 5236
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 EventBuilder fhicl: /data/lbnedaq/fcl/EventBuilder_demo2.fcl
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 Aggregator host: lbnedaq2
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 Aggregator port: 5265
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 Aggregator host: lbnedaq2
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 Aggregator port: 5266
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The "lbne-artdaq" parameter allows the user to set the directory in which the desired build of lbne-artdaq to use is located, the "PMT host" parameter is the host on which artdaq's process management tool script (pmt.rb, used by DAQInterface to launch and kill the artdaq processes) will run, and "log directory" is the directory to which lbne-artdaq's output will be sent. The "debug level" parameter allows the user to set the verbosity level of the output to the screen; setting it to higher values creates greater verbosity, and as a practical matter, the range of settings is currently 0-3. Loosely speaking, "0" means minimal output (not much beyond simply announcing a transition is complete), "1" includes announcements of progress during transitions, "2" includes these announcements plus the values of certain variables as well as lbne-artdaq output, and "3" is primarily of developer interest. The "pause before initialization" parameter allows the user to set a pause, in seconds, between when the artdaq processes start and when they're initialized; it has been observed that a latency of a few seconds is needed for initialization to proceed correctly (though this is not always the case -- on lbne35t-gateway01, with a high setting for "debug level", a pause is not needed; the reason why "debug level" matters in this context is not yet understood).
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After these individual parameters, one defines the EventBuilderMain and AggregatorMain artdaq processes. Specifically, an EventBuilderMain is defined in three lines, where each line should contain "EventBuilder", and define the host and port on which the EventBuilderMain will run (to run an artdaq process on the same host as you're on, use "localhost") as well as the FHiCL document used to initialize the EventBuilderMain. AggregatorMain is defined similarly, using the token "Aggregator", but without the FHiCL document supplied, as this is supplied by the choice of configuration in the configuration manager. Best practice is to place the EventBuilderMain's FHiCL documents in the /data/lbnedaq/fcl directory. Please note that the order of processes matters, and that they should be listed front-end to back-end, i.e., EventBuilders should appear before Aggregators.
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h1. Adding new configurations to RunControl
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Adding a new configuration selectable from RunControl involves two steps: creating a directory with the desired name of the configuration which contains the desired FHiCL documents, and then committing that directory to the git repository. 
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As of 11/20/14, the FHiCL documents associated with a given configuration are stored within the directory
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where "named_configuration" would be the name of the configuration, in this example. Within this directory, the following files are expected:
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* Aggregator1.fcl and Aggregator2.fcl, used to initialize the two AggregatorMain processes in the DAQ system
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* <named_component>_hw_cfg.fcl, used to initialize the BoardReaderMain process running the fragment generator associated with detector component "named_component". Note that there can be any number of such files associated with a configuration, as long as a given component is registered to RunControl (see below, "Adding new DAQ Components to RunControl")
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There are existing examples of configurations currently within /data/lbnedaq/config which can be studied (and even copied) for further guidance; however, please disregard the "tmp1" and "tmp2" configurations. Note that the FHiCL documents in these directories contain some variables which are set to "PLACEHOLDER", e.g.
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 event_builder_count: PLACEHOLDER
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Note that this is not legal FHiCL, but that DAQInterface will substitute in the appropriate value before using the FHiCL document to initialize an artdaq process; here, for example, it would replace "PLACEHOLDER" with the actual number of EventBuilderMain processes being run.
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Once you've added a new configuration to /data/lbnedaq/config, you'll need to perform a git commit. Essentially,  /data/lbnedaq/config is not merely a collection of directories naming configurations, but also a git repository. In fact, if you run
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git log
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you'll see a history of the commits made to the repository. In order to commit the directory, a couple of steps need to be taken:
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* From /data/lbnedaq/config/, run <pre>git add <named_configuration></pre>. This will "stage" the directory to be committed. Running <pre>git status</pre> should show you something like the following:
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# On branch master
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# Changes to be committed:
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#   (use "git reset HEAD <file>..." to unstage)
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#	new file:   helloworld/Aggregator1.fcl
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#	new file:   helloworld/Aggregator2.fcl
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#	new file:   helloworld/component01_hw_cfg.fcl
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#	new file:   helloworld/component02_hw_cfg.fcl
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* Next, run <pre>git commit -m "<commit message>"</pre>. The commit message should be your three initials followed by a colon, the name of the configuration followed by a colon, and then a brief description of the new configuration, including its name, e.g.:
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git commit -m "JCF: helloworld: This configuration does not exist in the actual repo, it's simply used for documentation purposes"
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Be aware of rules governing strings delimited by double quotes in bash -- i.e., don't try double quoting a word or phrase inside of your commit description. 
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Now, make sure that the commit took place correctly by running
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git diff HEAD
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If your commit is at the head of the master branch, you should see no output; additionally, if you run
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git log
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you should be able to see your commit at the top.
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h1. Adding new DAQ Components to RunControl
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The list of available DAQComponents (maps to BoardReader processes) is maintained by RunControl in the file:
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Each entry (name: host port) defines:
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* name - name of the component, maps to a <name>_hw_cfg.fcl in CfgMgr's configuration directory
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* host - hostname where BoardReader process will be started
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* port - XMLRPC port to be used, must be unique and used by other processes.
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For example:
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component01: lbnedaq2 5205
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component02: lbnedaq2 5206
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Has two components (component01 and component02) both running on lbnedaq2 on ports 5205 and 5206.
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h1.  Troubleshooting and FAQ
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h2.  Common RunControl issues
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h3. How can I get a list of all RunControl commands?
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lbnecmd help
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will list all available commands for RunControl with some details for help.  
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h3.  No real configurations are listed by RunControl
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If you run "lbnecmd listconfigs" and see something like:
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Available configs (Name : description)
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dummy : Dummy description
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Instead of your expected configurations, RunControl is not able to connect to CfgMgr.  Please make sure it's running (
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h2.  Common DAQInterface issues
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h3.  *Error handling*
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As of this writing (11/14/14) certain potential problems have been anticipated and are handled within DAQInterface. These problems include:
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# An artdaq process returns an error state after a transition request, or an exception is thrown by the XML-RPC library during the request
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# During periodic checks, one or more artdaq processes expected to exist are not found
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In either case, an error is reported via 0MQ to RunControl, and the "Recover" transition is automatically triggered. This transition is a fairly blunt instrument: it will kill any remaining artdaq processes and return DAQInterface to its original state of "stopped" (i.e., one in which it requires the "init" transition before anything else is done). 
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h3. *Your change to docs/config.txt or doesn't seem to do anything*
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Make sure you kill the existing daqinterface process and restart it
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h3. *On the initial transition ("lbnecmd init daq"), you see "error: [Errno 111] Connection refused"*
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If a "Recover" is triggered and you can see via "lbnecmd check" that DAQInterface is in the "stopped" state, try initializing again. If that doesn't work, you can try increasing the value of the "pause before initialization" variable in the docs/config.txt file. Empirically, it appears there needs to be a pause of at least 4 seconds on before the FHiCL documents can be successfully sent via XML-RPC to the processes; increasing this value may make it less likely that the "Connection refused" error occurs.
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h3. *On the initial transition, you see a regularly updating printout saying "Waiting for all processes to be launched"*
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Seeing one or two of these is fine. If, after several seconds, something like the following
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Waiting for all processes to be launched; if zombie pmt.rb is running on localhost please kill it and this program (PID 31820)
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keeps getting output to screen, it means there's a problem initializing. In this case, the current (11/12/14) course of action is to externally kill DAQInterface using the PID listed; also, it's possible that there may already be a pmt.rb executable running on the desired host, blocking the launch of a new one due to a port conflict, in which case you should log onto the host (assuming you're not already on it), and run 
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ps aux | grep -v grep | grep pmt.rb 
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to see if this is the case. If it's not and you can't think of what might be wrong (is the configuration manager running? have you double-checked docs/config.txt?), then try increasing the debug level in docs/config.txt for your next run-through, as this will likely shed light on the nature of the problem.
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h3. *Regardless of how high the debug level is set to, you don't see any output to screen when you issue transitions to DAQInterface*
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Chances are that DAQInterface was started in another terminal, and consequently, it's in that terminal where output will appear. This issue can be circumvented by redirecting DAQInterface output into a file; how this can be accomplished is described elsewhere in this document.