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BOSCO submission setup » History » Version 10

Farrukh Khan, 09/26/2017 03:15 PM

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h1. BOSCO submission setup
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The wiki contains step by step instructions on how to install and configure BOSCO submission from a glideinWMS factory
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{{toc}}
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h2. Terminology
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| *Term* | *Description* |
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| BOSCO_HOST | This is the remote login node from which glideins will be submitted to the local batch queue. For example, in the instructions below BOSCO_HOST is 'cori.nersc.gov' |
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| FACTORY_HOST | This is the node where glideinWMS factory service has been installed and configured to run. For example, in the instructions below FACTORY_HOST is 'fermifactory01.fnal.gov' |
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| FRONTEND_HOST | This is the node where glideinWMS frontend service has been installed and configured to run. For example, in the instructions below FRONTEND_HOST is 'cmssrv279.fnal.gov' |
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h2. Vanilla installation
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# Log into any node from where you can SSH into BOSCO_HOST. It is strongly recommended that the architecture and operating system of the host where you set BOSCO up from is similar to the BOSCO_HOST as you may need to copy some libraries over if needed. In the instructions below, the host being used to setup BOSCO is 'lxplus030.cern.ch'. <pre>
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[fkhan@dhcp-131-225-82-129 ~]$ ssh fakhan@lxplus030.cern.ch
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Password: 
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Last login: Tue Sep 19 22:44:19 2017 from dhcp-131-225-82-129.dhcp.fnal.gov
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* ********************************************************************
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* Welcome to lxplus030.cern.ch, SLC, 6.9
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* Archive of news is available in /etc/motd-archive
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* Reminder: You have agreed to comply with the CERN computing rules
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* https://cern.ch/ComputingRules
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* Puppet environment: production, Roger state: production
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* Foreman hostgroup: lxplus/nodes/login
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* LXPLUS Public Login Service
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* ********************************************************************
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[fakhan@lxplus030 ~]$
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</pre>
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# Take a look at the FTP server at UW Madison hosting different BOSCO versions "here":ftp://ftp.cs.wisc.edu/condor/bosco/. Select the appropriate version to download and wget the relevant boscoinstaller.tar.gz file. For example for version 1.2.10, fetch the installer as follows:<pre>
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[fakhan@lxplus030 ~]$ wget ftp://ftp.cs.wisc.edu/condor/bosco/1.2.10/boscoinstaller.tar.gz 
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--2017-09-19 22:29:10--  ftp://ftp.cs.wisc.edu/condor/bosco/1.2.10/boscoinstaller.tar.gz
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           => “boscoinstaller.tar.gz”
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Resolving ftp.cs.wisc.edu... 128.105.2.31
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Connecting to ftp.cs.wisc.edu|128.105.2.31|:21... connected.
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Logging in as anonymous ... Logged in!
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==> SYST ... done.    ==> PWD ... done.
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==> TYPE I ... done.  ==> CWD (1) /condor/bosco/1.2.10 ... done.
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==> SIZE boscoinstaller.tar.gz ... 20480
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==> PASV ... done.    ==> RETR boscoinstaller.tar.gz ... done.
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Length: 20480 (20K) (unauthoritative)
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100%[==================================================================================================================>] 20,480      --.-K/s   in 0.1s    
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2017-09-19 22:29:12 (182 KB/s) - “boscoinstaller.tar.gz” saved [20480]
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</pre>
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# Untar the downloaded installer and run it to install BOSCO on the current machine. For example:<pre>
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[fakhan@lxplus030 ~]$ tar -xvf boscoinstaller.tar.gz 
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boscoinstaller
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[fakhan@lxplus030 ~]$ ./boscoinstaller 
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Downloading BOSCO from ftp://ftp.cs.wisc.edu/condor/bosco/1.2/bosco-1.2-x86_64_RedHat6.tar.gz
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Installing BOSCO in ~/bosco
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Installing Condor from /tmp/fakhan/tmpbEI905/condor-8.6.6-x86_64_RedHat6-stripped to /afs/cern.ch/user/f/fakhan/bosco
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Condor has been installed into:
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    /afs/cern.ch/user/f/fakhan/bosco
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Configured condor using these configuration files:
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  global: /afs/cern.ch/user/f/fakhan/bosco/etc/condor_config
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  local:  /afs/cern.ch/user/f/fakhan/bosco/local.bosco/condor_config.local
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In order for Condor to work properly you must set your CONDOR_CONFIG
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environment variable to point to your Condor configuration file:
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/afs/cern.ch/user/f/fakhan/bosco/etc/condor_config before running Condor
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commands/daemons.
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Created a script you can source to setup your Condor environment
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variables. This command must be run each time you log in or may
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be placed in your login scripts:
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   source /afs/cern.ch/user/f/fakhan/bosco/bosco_setenv
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Congratulations, you installed BOSCO succesfully!
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</pre>
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# Create a _.bosco_ directory. For exmaple, <pre>
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[fakhan@lxplus030 ~]$ mkdir ~/.bosco
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</pre>
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# If you do not have an existing key pair to access BOSCO_HOST (in our case, _cori.nersc.gov_), generate a passwordless rsa key. Just press enter twice with no password when it prompts for one. Note it is important to name the key bosco_key.rsa: <pre>
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$ ssh-keygen -t rsa -f ~/.ssh/bosco_key.rsa
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</pre> *If you already have a key pair, there is no need to generate a new one*
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# If you do have an existing key pair to access BOSCO_HOST (in our case, _cori.nersc.gov_), copy it to your ssh directory and name it bosco_key. For example, your ~/.ssh/ directory should resemble this: <pre>
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[fakhan@lxplus030 ~]$ ls -al ~/.ssh/
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total 99
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drwx------.  3 fakhan def-cg  2048 Sep 13 19:59 .
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drwxr-xr-x. 17 fakhan def-cg  4096 Sep 19 22:32 ..
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-rw-------.  1 fakhan zh      1671 Sep 12 00:38 bosco_key.rsa
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-rw-------.  1 fakhan zh       405 Sep 12 00:42 bosco_key.rsa.pub
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-rw-------.  1 fakhan zh      1743 Feb  1  2017 id_rsa
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-rw-r--r--.  1 fakhan zh       408 Feb  1  2017 id_rsa.pub
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-rw-r--r--.  1 fakhan def-cg 83355 Sep 18 19:17 known_hosts
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</pre>
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# Source the bosco environment temporarily. 
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<pre>
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[fakhan@lxplus055 ~]$ source ~/bosco/bosco_setenv
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</pre>
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# Start bosco on the host. 
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<pre>
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[fakhan@lxplus055 ~]$ bosco_start
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BOSCO Started
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</pre>
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# Now add the BOSCO_HOST as a cluster you would like to submit to. You need to know the platform and the batch system of the BOSCO_HOST. In our example, BOSCO_HOST is cori.nersc.gov and it runs a variant of RH6 with Slurm. The eventual command will be: 
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<pre>
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[fakhan@lxplus055 ~]$ bosco_cluster --platform RH6 --add timm@cori.nersc.gov slurm
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Enter the password to copy the ssh keys to timm@cori.nersc.gov:
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 *****************************************************************
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 *                                                               *
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 *                      NOTICE TO USERS                          *
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 *                      ---------------                          *
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 *                                                               *
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 *  Lawrence Berkeley National Laboratory operates this          *
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 *  computer system under contract to the U.S. Department of     *
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 *  Energy.  This computer system is the property of the United  *
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 *  States Government and is for authorized use only.  *Users    *
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 *  (authorized or unauthorized) have no explicit or implicit    *
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 *  expectation of privacy.*                                     *
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 *                                                               *
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 *  Any or all uses of this system and all files on this system  *
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 *  may be intercepted, monitored, recorded, copied, audited,    *
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 *  inspected, and disclosed to site, Department of Energy, and  *
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 *  law enforcement personnel, as well as authorized officials   *
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 *  of other agencies, both domestic and foreign.  *By using     *
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 *  this system, the user consents to such interception,         *
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 *  monitoring, recording, copying, auditing, inspection, and    *
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 *  disclosure at the discretion of authorized site or           *
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 *  Department of Energy personnel.*                             *
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 *                                                               *
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 *  *Unauthorized or improper use of this system may result in   *
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 *  administrative disciplinary action and civil and criminal    *
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 *  penalties.  _By continuing to use this system you indicate   *
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 *  your awareness of and consent to these terms and conditions  *
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 *  of use.  LOG OFF IMMEDIATELY if you do not agree to the      *
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 *  conditions stated in this warning._*                         *
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 *                                                               *
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 *****************************************************************
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Password:
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 *****************************************************************
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 *                                                               *
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 *                      NOTICE TO USERS                          *
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 *                      ---------------                          *
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 *                                                               *
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 *  Lawrence Berkeley National Laboratory operates this          *
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 *  computer system under contract to the U.S. Department of     *
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 *  Energy.  This computer system is the property of the United  *
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 *  States Government and is for authorized use only.  *Users    *
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 *  (authorized or unauthorized) have no explicit or implicit    *
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 *  expectation of privacy.*                                     *
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 *                                                               *
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 *  Any or all uses of this system and all files on this system  *
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 *  may be intercepted, monitored, recorded, copied, audited,    *
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 *  inspected, and disclosed to site, Department of Energy, and  *
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 *  law enforcement personnel, as well as authorized officials   *
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 *  of other agencies, both domestic and foreign.  *By using     *
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 *  this system, the user consents to such interception,         *
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 *  monitoring, recording, copying, auditing, inspection, and    *
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 *  disclosure at the discretion of authorized site or           *
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 *  Department of Energy personnel.*                             *
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 *                                                               *
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 *  *Unauthorized or improper use of this system may result in   *
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 *  administrative disciplinary action and civil and criminal    *
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 *  penalties.  _By continuing to use this system you indicate   *
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 *  your awareness of and consent to these terms and conditions  *
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 *  of use.  LOG OFF IMMEDIATELY if you do not agree to the      *
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 *  conditions stated in this warning._*                         *
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 *                                                               *
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 *****************************************************************
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 *****************************************************************
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 *                                                               *
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 *                      NOTICE TO USERS                          *
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 *                      ---------------                          *
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 *                                                               *
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 *  Lawrence Berkeley National Laboratory operates this          *
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 *  computer system under contract to the U.S. Department of     *
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 *  Energy.  This computer system is the property of the United  *
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 *  States Government and is for authorized use only.  *Users    *
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 *  (authorized or unauthorized) have no explicit or implicit    *
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 *  expectation of privacy.*                                     *
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 *                                                               *
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 *  Any or all uses of this system and all files on this system  *
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 *  may be intercepted, monitored, recorded, copied, audited,    *
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 *  inspected, and disclosed to site, Department of Energy, and  *
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 *  law enforcement personnel, as well as authorized officials   *
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 *  of other agencies, both domestic and foreign.  *By using     *
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 *  this system, the user consents to such interception,         *
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 *  monitoring, recording, copying, auditing, inspection, and    *
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 *  disclosure at the discretion of authorized site or           *
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 *  Department of Energy personnel.*                             *
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 *                                                               *
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 *  *Unauthorized or improper use of this system may result in   *
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 *  administrative disciplinary action and civil and criminal    *
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 *  penalties.  _By continuing to use this system you indicate   *
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 *  your awareness of and consent to these terms and conditions  *
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 *  of use.  LOG OFF IMMEDIATELY if you do not agree to the      *
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 *  conditions stated in this warning._*                         *
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 *                                                               *
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 *****************************************************************
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 *****************************************************************
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 *                                                               *
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 *                      NOTICE TO USERS                          *
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 *                      ---------------                          *
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 *                                                               *
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 *  Lawrence Berkeley National Laboratory operates this          *
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 *  computer system under contract to the U.S. Department of     *
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 *  Energy.  This computer system is the property of the United  *
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 *  States Government and is for authorized use only.  *Users    *
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 *  (authorized or unauthorized) have no explicit or implicit    *
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 *  expectation of privacy.*                                     *
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 *                                                               *
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 *  Any or all uses of this system and all files on this system  *
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 *  may be intercepted, monitored, recorded, copied, audited,    *
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 *  inspected, and disclosed to site, Department of Energy, and  *
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 *  law enforcement personnel, as well as authorized officials   *
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 *  of other agencies, both domestic and foreign.  *By using     *
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 *  this system, the user consents to such interception,         *
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 *  monitoring, recording, copying, auditing, inspection, and    *
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 *  disclosure at the discretion of authorized site or           *
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 *  Department of Energy personnel.*                             *
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 *                                                               *
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 *  *Unauthorized or improper use of this system may result in   *
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 *  administrative disciplinary action and civil and criminal    *
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 *  penalties.  _By continuing to use this system you indicate   *
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 *  your awareness of and consent to these terms and conditions  *
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 *  of use.  LOG OFF IMMEDIATELY if you do not agree to the      *
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 *  conditions stated in this warning._*                         *
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 *                                                               *
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 *****************************************************************
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Downloading for timm@cori.nersc.gov.......
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Unpacking..
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Sending libraries to timm@cori.nersc.gov.
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Creating BOSCO for the WN's............................................
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Installing on cluster timm@cori.nersc.gov......
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Installation complete
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The cluster timm@cori.nersc.gov has been added to BOSCO
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It is available to run jobs submitted with the following values:
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> universe = grid
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> grid_resource = batch slurm timm@cori.nersc.gov
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</pre> This command will prompt you for a password. Please note that the above command might take a bit of time since it copies Bosco binaries over to the BOSCO_HOST. Do not panic and wait for command to return. 
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# Log onto the BOSCO_HOST and check for the 'bosco' directory. For example,
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<pre>
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[fakhan@lxplus055 ~]$ ssh -i ~/.ssh/bosco_key.rsa timm@cori.nersc.gov
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timm@cori07:~> ls -al  bosco
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total 8
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drwxr-xr-x  5 timm timm  512 Sep 19 13:58 .
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drwx--x--x 22 timm timm 4096 Sep 19 14:05 ..
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drwxr-xr-x  2 timm timm  512 Sep 19 13:58 campus_factory
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drwxr-xr-x  7 timm timm  512 Sep 19 13:57 glite
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drwxr-xr-x  2 timm timm  512 Sep 19 13:57 sandbox
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</pre>
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# Touch a new file inside the bosco directory with information about the version and deployment date. This is not necessarily needed but is helpful to track thing. For example,
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<pre>
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timm@cori07:~/bosco> touch ~/bosco/version_info
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timm@cori07:~/bosco> echo "bosco: 1.2.10" >> ~/bosco/version_info
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timm@cori07:~/bosco> echo "condor:8.6.6" >> ~/bosco/version_info
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timm@cori07:~/bosco> echo "deployed: Sep. 19, 2017" >> ~/bosco/version_info
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timm@cori09:~/bosco> cat ~/bosco/version_info
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bosco: 1.2.10  
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condor:8.6.6
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deployed: Sep. 19, 2017
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</pre>
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# The above steps should setup a clean install of bosco. For additional NERSC specific changes, please follow the instructions in the next section.
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h3. NERSC specific configuration instructions
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These instructions assume that you have followed the instructions in the previous section and have a vanilla installation of bosco already in place. Please the additional steps below for NERSC:
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# Vanilla bosco install doesn't have libcrypto.so.10 and libssl.so.10. These two libraries need to be copied over from any SL6/RH6/CC6 64 bit machine. You can use the commands below to identify the relevant library files to copy:
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<pre>
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[fakhan@lxplus055 ~]$ ldconfig -p | grep "libcrypto.so.10"
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	libcrypto.so.10 (libc6,x86-64) => /usr/lib64/libcrypto.so.10
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	libcrypto.so.10 (libc6) => /usr/lib/libcrypto.so.10
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[fakhan@lxplus055 ~]$ ldconfig -p | grep "libssl.so.10"
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	libssl.so.10 (libc6,x86-64) => /usr/lib64/libssl.so.10
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	libssl.so.10 (libc6) => /usr/lib/libssl.so.10
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</pre> 
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# Copy the files over to ~/bosco/glite/lib/ on cori.nersc.gov:
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<pre>
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[fakhan@lxplus055 ~]$ scp -i .ssh/bosco_key.rsa /usr/lib64/libssl.so.10 timm@cori.nersc.gov:~/bosco/glite/lib/
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 *****************************************************************
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 *                                                               *
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 *                      NOTICE TO USERS                          *
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 *                      ---------------                          *
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 *                                                               *
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 *  Lawrence Berkeley National Laboratory operates this          *
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 *  computer system under contract to the U.S. Department of     *
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 *  Energy.  This computer system is the property of the United  *
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 *  States Government and is for authorized use only.  *Users    *
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 *  (authorized or unauthorized) have no explicit or implicit    *
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 *  expectation of privacy.*                                     *
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 *                                                               *
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 *  Any or all uses of this system and all files on this system  *
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 *  may be intercepted, monitored, recorded, copied, audited,    *
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 *  inspected, and disclosed to site, Department of Energy, and  *
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 *  law enforcement personnel, as well as authorized officials   *
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 *  of other agencies, both domestic and foreign.  *By using     *
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 *  this system, the user consents to such interception,         *
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 *  monitoring, recording, copying, auditing, inspection, and    *
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 *  disclosure at the discretion of authorized site or           *
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 *  Department of Energy personnel.*                             *
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 *                                                               *
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 *  *Unauthorized or improper use of this system may result in   *
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 *  administrative disciplinary action and civil and criminal    *
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 *  penalties.  _By continuing to use this system you indicate   *
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 *  your awareness of and consent to these terms and conditions  *
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 *  of use.  LOG OFF IMMEDIATELY if you do not agree to the      *
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 *  conditions stated in this warning._*                         *
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 *                                                               *
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 *****************************************************************
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libssl.so.10                                                                                                              100%  433KB 433.0KB/s   00:01    
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[fakhan@lxplus055 ~]$ scp -i .ssh/bosco_key.rsa /usr/lib64/libcrypto.so.10 timm@cori.nersc.gov:~/bosco/glite/lib/
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 *****************************************************************
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 *                                                               *
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 *                      NOTICE TO USERS                          *
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 *                      ---------------                          *
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 *                                                               *
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 *  Lawrence Berkeley National Laboratory operates this          *
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 *  computer system under contract to the U.S. Department of     *
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 *  Energy.  This computer system is the property of the United  *
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 *  States Government and is for authorized use only.  *Users    *
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 *  (authorized or unauthorized) have no explicit or implicit    *
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 *  expectation of privacy.*                                     *
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 *                                                               *
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 *  Any or all uses of this system and all files on this system  *
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 *  may be intercepted, monitored, recorded, copied, audited,    *
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 *  inspected, and disclosed to site, Department of Energy, and  *
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 *  law enforcement personnel, as well as authorized officials   *
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 *  of other agencies, both domestic and foreign.  *By using     *
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 *  this system, the user consents to such interception,         *
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 *  monitoring, recording, copying, auditing, inspection, and    *
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 *  disclosure at the discretion of authorized site or           *
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 *  Department of Energy personnel.*                             *
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 *                                                               *
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 *  *Unauthorized or improper use of this system may result in   *
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 *  administrative disciplinary action and civil and criminal    *
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 *  penalties.  _By continuing to use this system you indicate   *
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 *  your awareness of and consent to these terms and conditions  *
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 *  of use.  LOG OFF IMMEDIATELY if you do not agree to the      *
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 *  conditions stated in this warning._*                         *
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 *                                                               *
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 *****************************************************************
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libcrypto.so.10                                                                                                           100% 1925KB 962.6KB/s   00:02    
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</pre>
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h2. GlideinWMS frontend configuration
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h2. GlideinWMS factory configuration