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daqinterface v3 03 01 instructions

A brief overview

DAQInterface is a set of Python and Bash scripts which make it easy to start and run an existing artdaq-based DAQ system. Specifically, this means the ability to select how many of each type of artdaq process (BoardReaders, EventBuilders, DataLoggers, Dispatchers and RoutingMasters) to use in a running DAQ system, as well as what hosts they should run on. Additionally, DAQInterface provides built-in support for sending transitions via XML-RPC to artdaq processes at the command line as well as the saving of metadata related to a run (such as the version of artdaq used, the location of the artdaq logfiles, etc.). Note than in the instructions below, if you wish to use DAQInterface v3_03_01 rather than v3_03_00, just replace "v3_03_00" with "v3_03_01".

Getting started

Getting DAQInterface to perform runs takes about 5-10 minutes, assuming you already have it available as a UPS product (e.g., this would be the case if you have access to the products area /cvmfs/fermilab.opensciencegrid.org/products/artdaq/) and you have an installation of the artdaq-demo package which is based on artdaq v3. If you don't already have an artdaq-demo installation, you can just execute the following:

wget https://cdcvs.fnal.gov/redmine/projects/artdaq-demo/repository/revisions/8a7edd8fa2cb43e95d865eef6735d327d108cc4e/raw/tools/quick-mrb-start.sh
chmod +x quick-mrb-start.sh
./quick-mrb-start.sh --tag=v3_03_00

For using other artdaq-based packages besides artdaq-demo with DAQInterface, after reading this wiki take a look at the links at the bottom of this page. If you're stuck after reading the documentation, please contact John Freeman at .

If you're using a ups products directory which doesn't yet contain DAQInterface v3_03_00, you can get it from Fermilab's SciSoft site:

cd <products directory>  # Replace <products directory> with the actual name of your products directory
curl -O  http://scisoft.fnal.gov/scisoft/packages/artdaq_daqinterface/v3_03_00/artdaq_daqinterface-3.03.00-noarch.tar.bz2
tar xjf artdaq_daqinterface-3.03.00-noarch.tar.bz2
rm -f artdaq_daqinterface-3.03.00-noarch.tar.bz2

And when you have DAQInterface v3_03_00 in your products directory, you can set it up:
source <products directory>/setup   # Replace <products directory> with the actual name of your products directory
setup artdaq_daqinterface v3_03_00 

Now, let's create a DAQInterface work area:

mkdir $HOME/DAQInterface    # You can, of course, make a directory with another name if you like
cd $HOME/DAQInterface
cp $ARTDAQ_DAQINTERFACE_DIR/docs/user_sourcefile_example .
cp $ARTDAQ_DAQINTERFACE_DIR/docs/settings_example .
cp $ARTDAQ_DAQINTERFACE_DIR/docs/known_boardreaders_list_example .
cp $ARTDAQ_DAQINTERFACE_DIR/docs/boot.txt .

Since DAQInterface doesn't know the experiment-specific requirements of its user, we'll want to create a file to source which sets up an environment appropriate for our needs. In our area, this file is "user_sourcefile_example". Let's open it up, and look at the top line:

export DAQINTERFACE_SETTINGS=$ARTDAQ_DAQINTERFACE_DIR/docs/settings_example

What you'll want to do is change this top line so that the DAQINTERFACE_SETTINGS variable refers to fully-qualified filename of the settings_example file we copied into our area. Once you've done that, let's open the settings_example file itself, and modify the line

productsdir_for_bash_scripts: $HOME/path_to_product_dir_not_yet_defined/products

so that the value of "productsdir_for_bash_scripts" points to a products directory which contains xmlrpc_c (for sending messages to DAQInterface) and root (to allow the execution of scripts which crosscheck the *.root files output by the DAQ). Then modify the lines
log_directory: /tmp
record_directory: $HOME/run_records

so they refer to the directories in which you'd like artdaq to output its logfiles (log_directory) and to save records of what happened during each run (record_directory). It's recommended that you not leave the log directory as "/tmp", otherwise your logfiles will most likely be periodically removed. Of course, make sure the directories you set here actually exist.

The last file we'll edit is the boot.txt file. This file will be passed to DAQInterface on the boot transition (i.e., the transition in which DAQInterface launches the artdaq processes). Take its top line:

DAQ setup script: name_of_DAQ_setup_script_not_yet_defined

...and replace name_of_DAQ_setup_script_not_yet_defined with the fully-qualified filename of the script you want DAQInterface to source before it tries to launch artdaq processes. E.g., if you installed artdaq-demo with the quick-mrb-start.sh script in $HOME/artdaq-demo-installation, you'd want to replace "name_of_DAQ_setup_script_not_yet_defined" with "$HOME/artdaq-demo-installation/setupARTDAQDEMO".

You'll also see that hosts (all localhost) have been defined for two EventBuilders, a DataLogger and a Dispatcher; we'll leave them like that for now.

A first walkthrough

Now that we've made the needed modifications to the files in our area, it's time to set up the environment for DAQInterface to run. In the terminal, type

export DAQINTERFACE_USER_SOURCEFILE=$PWD/user_sourcefile_example
source $ARTDAQ_DAQINTERFACE_DIR/source_me

and you'll see something like the following:
* The command was successful
* To launch, just type "DAQInterface &" (excluding quotes, ampersand optional)
* Output will be logged in /tmp/daqinterface_jcfree/DAQInterface_partition<N>.log, where <N> 
  is the partition the DAQInterface instance is on
* Help is available at https://cdcvs.fnal.gov/redmine/projects/artdaq-utilities/wiki/Artdaq-daqinterface

so then we type
DAQInterface &

and you'll see one of two possible outputs. Assuming there isn't already a DAQInterface running on the default port DAQInterface listens on, you'll see the following:
DAQInterface in partition 0 launched and now in "stopped" state, listening on port 10000

in which case the launch was successful, and you can skip down to the next paragraph. However, if there IS a DAQInterface already running on your host, you'll see:
There already appears to be a DAQInterface instance running on the requested partition number (0); please either kill the instance (if it's
yours) or use a different partition. Run "listdaqinterfaces.sh" for more info.

where if you run listdaqinterfaces.sh you'll see something like:
DAQInterface instance was launched at 11:08 by jcfree in partition 0 listening on port 10000

In your environment, there's an environment variable called DAQINTERFACE_PARTITION_NUMBER which is used when DAQInterface is launched to determine which port to listen on. Partition numbers count up sequentially from 0, and only one DAQInterface instance can be used per partition. The default value of DAQINTERFACE_PARTITION_NUMBER is 0; if there's already a DAQInterface instance running on this partition, your options are (1) to launch DAQInterface on an unused partition, or (2) to kill the DAQInterface instance using partition 0, assuming it's controlled by your user account and you know it's not in active use. To launch DAQInterface in an unused partition, you could just do the following, e.g.:
export DAQINTERFACE_PARTITION_NUMBER=1
DAQInterface &

and to kill the existing DAQInterface on partition 0 and launch your new one, you could do
kill_daqinterface_on_partition.sh 0
DAQInterface &

DAQInterface is now ready to receive transition commands. Now type the following:

just_do_it.sh ./boot.txt 0 --config "demo" --comps "component01 component02" 

This command can be understood to mean, "Give DAQInterface the file ./boot.txt which tells it how many artdaq processes to launch and where to launch them, initialize the processes after they're launched with the FHiCL documents found in the configuration called demo, and in particular, initialize two BoardReaders with FHiCL documents called component01_hw_cfg.fcl and component02_hw_cfg.fcl". After executing the command, give it a few moments, and you should eventually see something like the following:
Mon Sep 18 14:29:13 CDT 2017: START transition complete for run 959
Will acquire data until Ctrl-C is hit

DAQInterface is now in the "running" state. We'll step through the commands executed automatically by the script in a moment, but essentially what we've done is launched a system running two ToySimulator fragment generators in two BoardReader processes, where events are assembled by two EventBuilders and sent to a DataLogger which saves them to disk and sends them to a Dispatcher. To stop datataking, hit Ctrl-c from the terminal running just_do_it.sh. Momentarily, you should return to the command line, and in the terminal running DAQInterface, you should see something like:
Wed Dec 21 14:34:53 CST 2016: TERMINATE transition complete
To see logfile(s), on localhost run "ls -ltr /tmp/pmt/pmt-55811.*.log" 

A second walkthrough

Whereas just_do_it.sh strung multiple transitions together in order to make life simpler for the user, for educational purposes it's useful to step through running DAQInterface one transition at a time. In this section, we'll do just that, as well as provide a fuller explanation for the output produced during a run. While not required, you may want to execute the commands from another terminal as it makes the interface a bit cleaner; in order to do this, open a second terminal, cd into the "DAQInterface" working directory you created earlier, and do the following:

source <existing products directory>/setup
setup artdaq_daqinterface v3_03_00
cd $HOME/DAQInterface   # Or whatever your DAQInterface working directory is
export DAQINTERFACE_USER_SOURCEFILE=$PWD/user_sourcefile_example
source $ARTDAQ_DAQINTERFACE_DIR/source_me

...where for the future, you may want to consider putting all those commands in a single file to source. Now that you've set up the environment, assuming you launched DAQInterface in partition 0, run the following:
status.sh

or, if you launched it in another partition, you'll want to set the DAQINTERFACE_PARTITION_NUMBER environment variable accordingly as well. E.g., if you launched DAQInterface on partition 1, you'd want to do:
 
export DAQINTERFACE_PARTITION_NUMBER=1 
status.sh 

Either way, you should see this:
Result:

String: 'stopped'

Essentially, status.sh queries the DAQInterface state machine and prints DAQInterface's state to the screen. just_do_it.sh uses this script to ensure that the transitions it sends DAQInterface went through successfully. We're now in the "stopped" state of DAQInterface - this is the ground state, and means that no artdaq processes exist. In order to launch processes, we send the "boot" transition. To send individual transitions, we use the send_transition.sh script. However, before we boot the system, we need to specify which components (fragment generators) we want to use. The allowed fragment generators will be listed by DAQInterface if you issue it the following command:
listdaqcomps.sh

where the output, in the terminal in which DAQInterface was launched, will look like this:
# of components found in listdaqcomps call: 2
component01 (runs on localhost)
component02 (runs on localhost)

..etc. These lines refer to ToySimulator instances designed to run on the current host; in a real experiment you'd expect a more complex listing. They are defined in the known_boardreaders_list_example file. Let's select two components (although we could run with just one, or all of them, if we wanted):
setdaqcomps.sh component01 component02

...at the end of the output when you execute this is "Result: Nil"; this is expected, and occurs whenever you send DAQInterface this command, or any of the upcoming transitions. Now we can send the boot transition:
send_transition.sh boot boot.txt

In the terminal running DAQInterface, you'll see something like this:
Thu Sep 27 13:49:37 CDT 2018: BOOT transition underway
Finished call to launch_procs(); will now confirm that artdaq processes are up...
Checking that processes are up (check 1 of a max of 5)...
Checking that processes are up (check 2 of a max of 5)...
All processes appear to be up

artdaq_mfextensions v1_03_02a, e15:prof:s64, appears to be available; if
windowing is supported on your host you should see the messageviewer
window pop up momentarily

Thu Sep 27 13:49:55 CDT 2018: BOOT transition complete

If you're sending transitions in the same terminal as DAQInterface is running, hit Enter to return to the command line. What the above output tells us is that we've successfully launched the artdaq processes, and that since the version of artdaq_mfextensions needed by the MessageViewer application is available, assuming your terminal's display settings are set correctly, a window will pop up which will print messages sent by the artdaq processes. The boot.txt file which you edited earlier is used by DAQInterface during the boot transition to determine where to find the script to source before it tries to launch the processes, and then how many EventBuilder, DataLogger and Dispatcher processes to launch and where to launch them. The BoardReader processes which get launched are defined when setdaqcomps.sh is called, combined with the information provided by known_boardreaders_list_example.

Now that the processes are alive, we'll configure them with FHiCL documents. Simply execute the following:

send_transition.sh config demo

"demo" is the name of the configuration which defines the FHiCL documents used to initialize the artdaq processes. Technically speaking, it refers to the subdirectory which can be found in the $ARTDAQ_DAQINTERFACE_DIR/simple_test_config directory, and which contains the needed FHiCL documents. It's possible to change the way DAQInterface interprets the configuration name by editing the user source file, either by switching it to look at another directory on the filesystem or getting it to use an instance of artdaq-database, discussed in the advanced links at the bottom of this wiki. If you wish to see the list of available configurations, just type

listconfigs.sh

and you'll see something like the following:
Available configurations: 
ascii_simulator_example
combined_eb_and_dl
config_includes
demo
demo_artdaq_v1
demo_largesystem
file_closing_example
multiple_art_processes_example
multiple_dataloggers
no_aggregators
pull_mode
request_based_dataflow_example
request_dataflow_windowmode
routing_master_example
subrun_example

See file "/tmp/listconfigs_jcfree.txt" for saved record of the above configurations

Please note that for the time being, the optional
max_configurations_to_list variable which may be set in
/home/jcfree/scratch/DAQInterface_for_updated_documentation/settings_example
is only applicable when working with the database

Most of these configurations are intended for developer use; we'll be working with "demo". Once you've sent the config transition, you'll see the return values of the individual artdaq processes (should be "Success") and then something like this:
To see logfile(s), on localhost run "ls -ltr /tmp/pmt/pmt-32989.*.log" 

Wed Dec 21 15:02:48 CST 2016: CONFIG transition complete

Basically, as a courtesy to users - a particularly useful one, if MessageViewer isn't available - the name of the logfiles for the run are provided in wildcard form. Please be aware that there's a possibility that logfiles from much older runs may be encompassed by that wildcard if artdaq's Process Management Tool had the same process ID for the older run as for the current run; this is typically only an issue if there are logfiles for hundreds or thousands of runs in the same directory. It's possible to watch the logfile update in real time if, in a separate terminal, you type tail -f <name of logfile>.

Along with the new logfiles, you'll also find in the "/tmp" directory a directory called "run_record_attempted_<USER>/<DATE>", where "<USER>" is your username stored in the environment variable $USER, and <DATE> is the moment the directory of the same name was created. In here, what you'll find are the following:

-The FHiCL documents which are used to initialize the artdaq processes during the config transition
-The DAQInterface boot file, boot.txt
-The metadata file, metadata.txt
-A copy of the script which DAQInterface sourced before launching the artdaq processes, setup.txt
-The list of possible boardreaders DAQInterface used, known_boardreaders_list.txt
-The list of process ranks, ranks.txt. This contains relatively low-level information about the artdaq processes which were actually used in the run, including the host they ran on, the port they listened for commands on, and their "rank". Some diagnostic messages artdaq produces refer to a process's "rank", and this list will translate a rank to the actual process in question.

If something goes wrong during configuration, the contents of /tmp/run_record_attempted_<USER>/<DATE> can potentially be useful for diagnostic purposes. Otherwise, its contents get moved to the run records directory on the start transition, covered next. Click on "Show" for details on the metadata file:

Now let's issue the start transition:

send_transition.sh start

and then DAQInterface will report
Wed Dec 21 16:22:29 CST 2016: START transition complete for run 2

Now we're in the "running" state, as you can confirm if you issue the status.sh command. Note that the run # is deduced from the run records directory - it's a value one higher than the most recently saved run in the run records directory. If you look in the run records directory you'll now see that the contents of /tmp/run_record_attempted_<USER>/<DATE> have been copied into the subdirectory called "2/".

Stopping datataking and putting DAQInterface in the "ready" state is quite simple:

send_transition.sh stop

at which point, you can either start a new run, or you can send the artdaq processes the "shutdown" command and then kill them, via the terminate transition:
send_transition.sh terminate

You can confirm that you've created a *.root file from the run by looking in the /tmp directory.

The DAQInterface package provides a couple of convenient tools for rapidly examining the results of your run after it's complete:

show_logfile_for_run.sh <run number> <open file (0 or 1)>

...will show the logfile for the run number given in the first argument, and will open the file for you (or not) depending on whether the second argument is 1 or 0.
show_warnings_for_run.sh <run number>

...will show all MessageFacility messages of severity level Warning or Error in the logfile.

DAQInterface for your experiment

If you've reached this point in the documentation, you're now ready to prepare DAQInterface to work not with artdaq-demo, but with your own experiment's artdaq-based software. You'll want to make copies of the settings file and boot file you've been working with and make the appropriate edits; how to do so is described in The settings file reference and The boot file reference. You'll also want to switch to using the artdaq-database as the source of your configurations rather than the local directory in the DAQInterface package; making this switch is described in Changing the source of the configurations.

Finally, when you call the setdaqcomps.sh command, DAQInterface will look in the file referred to by the DAQINTERFACE_KNOWN_BOARDREADERS_LIST environment variable and use the file's contents to determine the host and (optionally) the port on which to launch the BoardReaders; the corresponding information for the other artdaq process types is provided in the boot file. You'll want to make a copy of the $DAQINTERFACE_KNOWN_BOARDREADERS_LIST file we've been using, and edit it, since you'll want to give your experiment's fragment generators more descriptive names than "component01", "component02", etc. E.g. if you want to use the name tpcreceiver02, then you'll want to both make sure that a file called tpcreceiver02_hw_cfg.fcl exists in the configuration you use, and also that there's a corresponding row in the file $DAQINTERFACE_KNOWN_BOARDREADERS_LIST which looks like this:

tpcreceiver02  madeuphost.fnal.gov -1

where of course you'll want to use a host which is appropriate for your purposes. The "-1" tells DAQInterface to determine which port to tell the artdaq process to listen for commands on; if you'd like to override this, replace "-1" with a port number. Also make sure to edit the user_sourcefile_example to set DAQINTERFACE_KNOWN_BOARDREADERS_LIST correctly.