Option to merge output and error streams
Brainstorming desired features, we can discuss them all and decide relative priorities in a meeting
Option to merge output and error streams:
Separating .out and .err loses context of how the messages were interwoven. It's part of the cause of us taking several days to track down a user problem this week.
I would definitely use an option (-oe?) to merge the output and error streams together.
I think implementation is as simple as "exec 2>&1" at the top of art_sam_wrap
You'll still get an empty .err back, but fixing that requires escalating this into jobsub/condor