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Feature #3588

add option to ifront_q so it can read just a single experiment

Added by Dennis Box over 6 years ago. Updated over 6 years ago.

Status:
Closed
Priority:
Normal
Assignee:
-
Target version:
Start date:
03/12/2013
Due date:
% Done:

0%

Estimated time:
Duration:

Description

something like -constraint 'Agroup=="group_mu2e"' to the underlying condor_q would do it

History

#1 Updated by Dennis Box over 6 years ago

  • Tracker changed from Bug to Feature
  • Description updated (diff)

#2 Updated by Dennis Box over 6 years ago

  • Target version changed from v1.0 to 328

#3 Updated by Margaret Votava over 6 years ago

  • Target version changed from 328 to v1.2

#4 Updated by Dennis Box over 6 years ago

My entry point was wrong in 2 respects: 1) I was sending to jobmanager-condor instead of jobmanager-lsf and 2) the default queue for jobmanager-lsf wouldn't accept my jobs. There is a nova queue that I should be using, but after John Brunelle temporarily allowed me into the altas (default) queue I can do this:

[gfactory@gpsn01 entry_HARVARD_nova]$ globus-job-run heroatlas.fas.harvard.edu/jobmanager-lsf /usr/bin/printenv
MANPATH=/opt/osg-1.2.6/globus/man:/n/sw/odyssey-apps/modules-3.2.6/Modules/man:/lsf/7.0/man::/opt/osg-1.2.6/vdt/man:/opt/osg-1.2.6/perl/man:/opt/osg-1.2.6/expat/man:/opt/osg-1.2.6/logrotate/man:/opt/osg-1.2.6/wget/man:/opt/osg-1.2.6/mysql5/man:/opt/osg-1.2.6/jdk1.6/man:/opt/osg-1.2.6/glite/share/man:/opt/osg-1.2.6/curl/share/man:/opt/osg-1.2.6/prima/man:/opt/osg-1.2.6/edg/share/man:/opt/osg-1.2.6/apache/man:/opt/osg-1.2.6/subversion/share/man:/opt/osg-1.2.6/ndt/man:/opt/osg-1.2.6/owamp/man:/opt/osg-1.2.6/bwctl/man:/opt/osg-1.2.6/vdt/man:/opt/osg-1.2.6/perl/man:/opt/osg-1.2.6/expat/man:/opt/osg-1.2.6/logrotate/man:/opt/osg-1.2.6/wget/man:/opt/osg-1.2.6/mysql5/man:/opt/osg-1.2.6/jdk1.6/man:/opt/osg-1.2.6/glite/share/man:/opt/osg-1.2.6/curl/share/man:/opt/osg-1.2.6/prima/man:/opt/osg-1.2.6/edg/share/man:/opt/osg-1.2.6/apache/man:/opt/osg-1.2.6/subversion/share/man:/opt/osg-1.2.6/ndt/man:/opt/osg-1.2.6/owamp/man:/opt/osg-1.2.6/bwctl/man:/opt/osg-1.2.6/vdt/man:/opt/osg-1.2.6/perl/man:/opt/osg-1.2.6/expat/man:/opt/osg-1.2.6/logrotate/man:/opt/osg-1.2.6/wget/man:/opt/osg-1.2.6/mysql5/man:/opt/osg-1.2.6/jdk1.6/man:/opt/osg-1.2.6/glite/share/man:/opt/osg-1.2.6/curl/share/man:/opt/osg-1.2.6/prima/man:/opt/osg-1.2.6/edg/share/man:/opt/osg-1.2.6/apache/man:/opt/osg-1.2.6/subversion/share/man:/opt/osg-1.2.6/ndt/man:/opt/osg-1.2.6/owamp/man:/opt/osg-1.2.6/bwctl/man
GRID3_DATA_DIR=/n/data1/ATLAS/osg/data
LSF_EAUTH_AUX_PASS=yes
LSB_EXEC_CLUSTER=lsf-odyssey
GRID3_TMP_WN_DIR=/scratch
HOSTNAME=atlas5415
MYSQL_UNIX_PORT=/opt/osg-1.2.6/vdt-app-data/mysql5/var/mysql.sock
LC_MONETARY=en_US
OSG_GLEXEC_LOCATION=UNAVAILABLE
PAC_ANCHOR=/opt/osg-1.2.6
LSF_LOGDIR=/lsf/log
LSF_LIM_API_NTRIES=1
SHELL=/bin/bash
LSB_BATCH_JID=56878668
HISTSIZE=1000
VOMS_USERCONF=/opt/osg-1.2.6/glite/etc/vomses
KDE_NO_IPV6=1
GLOBUS_LOCATION=/n/data1/ATLAS/osg/wn-client/globus
GLOBUS_PATH=/opt/osg-1.2.6/globus
PERL5LIB=/opt/osg-1.2.6/perl/lib/5.8.0:/opt/osg-1.2.6/perl/lib/5.8.0/x86_64-linux-thread-multi:/opt/osg-1.2.6/perl/lib/site_perl/5.8.0:/opt/osg-1.2.6/perl/lib/site_perl/5.8.0/x86_64-linux-thread-multi:/opt/osg-1.2.6/vdt/lib:/opt/osg-1.2.6/perl/lib/5.8.0:/opt/osg-1.2.6/perl/lib/5.8.0/x86_64-linux-thread-multi:/opt/osg-1.2.6/perl/lib/site_perl/5.8.0:/opt/osg-1.2.6/perl/lib/site_perl/5.8.0/x86_64-linux-thread-multi:/opt/osg-1.2.6/vdt/lib:/opt/osg-1.2.6/perl/lib/5.8.0:/opt/osg-1.2.6/perl/lib/5.8.0/x86_64-linux-thread-multi:/opt/osg-1.2.6/perl/lib/site_perl/5.8.0:/opt/osg-1.2.6/perl/lib/site_perl/5.8.0/x86_64-linux-thread-multi:/opt/osg-1.2.6/vdt/lib:
LSB_TRAPSIGS=trap # 15 10 12 2 1
LSB_ERRORFILE=/n/home11/dbox/.globus/job/heroatlas.fas.harvard.edu/335.1363386422/stderr
LS_JOBPID=9067
VDTSETUP_AGREE_TO_LICENSES=y
LC_NUMERIC=en_US
LSB_MAX_NUM_PROCESSORS=1
LSB_JOBRES_CALLBACK=48726@atlas5415
OLDPWD=/n/home11/dbox
LSF_SERVERDIR=/lsf/7.0/linux2.6-glibc2.3-x86_64/etc
QTDIR=/usr/lib64/qt-3.3
LSB_JOBID=56878668
LSB_JOB_EXECUSER=dbox
OSG_WN_TMP=/scratch
QTINC=/usr/lib64/qt-3.3/include
X509_CERT_DIR=/opt/osg-1.2.6/globus/TRUSTED_CA
LSB_JOBRES_PID=9067
GRID_SECURITY_CONTEXT_FD=10
GATEKEEPER_PEER=131.225.67.70
LSB_JOBNAME=#! /bin/sh;#;# LSF batch job script built by Globus Job Manager;#;#BSUB -i /dev/null;#BSUB -o /n/home11/dbox/.globus/job/heroatlas.fas.harvard.edu/335.1363386422/stdout;#BSUB -e /n/home11/dbox/.globus/job/heroatlas.fas.harvard.edu/335.1363386422/stderr;#BSUB -n 1;HOME="/n/home11/dbox"; export HOME;VO_ATLAS_SW_DIR="/cvmfs/atlas.cern.ch/repo/sw"; export VO_ATLAS_SW_DIR;OSG_DATA="/n/data1/ATLAS/osg/data"; export OSG_DATA;LD_LIBRARY_PATH="/opt/osg-1.2.6/subversion/lib:/opt/osg-1.2.6/apache/lib:/opt/osg-1.2.6/MonaLisa/Service/VDTFarm/pgsql/lib:/opt/osg-1.2.6/prima/lib:/opt/osg-1.2.6/curl/lib:/opt/osg-1.2.6/glite/lib64:/opt/osg-1.2.6/glite/lib:/opt/osg-1.2.6/jdk1.6/jre/lib/i386:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/server:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/client:/opt/osg-1.2.6/mysql5/lib/mysql:/opt/osg-1.2.6/globus/lib:/opt/osg-1.2.6/berkeley-db/lib:/opt/osg-1.2.6/expat/lib:/opt/osg-1.2.6/subversion/lib:/opt/osg-1.2.6/apache/lib:/opt/osg-1.2.6/MonaLisa/Service/VDTFarm/pgsql/lib:/opt/osg-1.2.6/prima/lib:/opt/osg-1.2.6/curl/lib:/opt/osg-1.2.6/glite/lib64:/opt/osg-1.2.6/glite/lib:/opt/osg-1.2.6/jdk1.6/jre/lib/i386:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/server:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/client:/opt/osg-1.2.6/mysql5/lib/mysql:/opt/osg-1.2.6/berkeley-db/lib:/opt/osg-1.2.6/expat/lib:/lsf/7.0/linux2.6-glibc2.3-x86_64/lib"; export LD_LIBRARY_PATH;ATLAS_LOCAL_AREA="/n/data1/ATLAS/osg/app/atlas_app/local"; export ATLAS_LOCAL_AREA;OSG_GLEXEC_LOCATION="UNAVAILABLE"; export OSG_GLEXEC_LOCATION;GRID3_TMP_WN_DIR="/scratch"; export GRID3_TMP_WN_DIR;GRID3_TMP_DIR="/n/data1/ATLAS/osg/data"; export GRID3_TMP_DIR;OSG_LOCATION="/opt/osg-1.2.6"; export OSG_LOCATION;OSG_HOSTNAME="heroatlas.fas.harvard.edu"; export OSG_HOSTNAME;OSG_STORAGE_ELEMENT="True"; export OSG_STORAGE_ELEMENT;OSG_JOB_CONTACT="heroatlas.fas.harvard.edu/jobmanager-lsf"; export OSG_JOB_CONTACT;GRID3_SITE_NAME="HU_ATLAS_Tier2"; export GRID3_SITE_NAME;OSG_APP="/n/data1/ATLAS/osg/app"; export OSG_APP;GRID3_BASE_DIR="/opt/osg-1.2.6"; export GRID3_BASE_DIR;GRID3_DATA_DIR="/n/data1/ATLAS/osg/data"; export GRID3_DATA_DIR;OSG_DEFAULT_SE="heroatlas.fas.harvard.edu"; export OSG_DEFAULT_SE;OSG_GRID="/n/data1/ATLAS/osg/wn-client"; export OSG_GRID;LOGNAME="dbox"; export LOGNAME;OSG_SQUID_LOCATION="UNAVAILABLE"; export OSG_SQUID_LOCATION;GLOBUS_GRAM_JOB_CONTACT="https://heroatlas.fas.harvard.edu:46292/335/1363386422/"; export GLOBUS_GRAM_JOB_CONTACT;GLOBUS_LOCATION="/n/data1/ATLAS/osg/wn-client/globus"; export GLOBUS_LOCATION;OSG_SITE_NAME="HU_ATLAS_Tier2"; export OSG_SITE_NAME;GLOBUS_GRAM_MYJOB_CONTACT="URLx-nexus://heroatlas.fas.harvard.edu:50915/"; export GLOBUS_GRAM_MYJOB_CONTACT;OSG_SITE_WRITE="UNAVAILABLE"; export OSG_SITE_WRITE;GRID3_APP_DIR="/n/data1/ATLAS/osg/app"; export GRID3_APP_DIR;OSG_WN_TMP="/scratch"; export OSG_WN_TMP;X509_USER_PROXY="/n/home11/dbox/.globus/job/heroatlas.fas.harvard.edu/335.1363386422/x509_up"; export X509_USER_PROXY;OSG_SITE_READ="UNAVAILABLE"; export OSG_SITE_READ; if test 'X${LD_LIBRARY_PATH}' != 'X'; then; LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:"; else; LD_LIBRARY_PATH=""; fi; export LD_LIBRARY_PATH; #Change to directory requested by user;cd /n/home11/dbox;pids='';exit_code=0;/usr/bin/printenv & pids="$pids $!"; for x in $pids; do; wait $x; tmp_exit_code=$?; if [ $exit_code = 0 -a $tmp_exit_code != 0 ]; then; exit_code=$tmp_exit_code; fi; done; exit $exit_code
VDTSETUP_GOOD_PLATFORM=1
ANT_HOME=/opt/osg-1.2.6/ant
LC_ALL=en_US
BSUB_BLOCK_EXEC_HOST=
OSG_SQUID_LOCATION=UNAVAILABLE
OSG_JOB_CONTACT=heroatlas.fas.harvard.edu/jobmanager-lsf
LSF_LIBDIR=/lsf/7.0/linux2.6-glibc2.3-x86_64/lib
GLITE_LOCATION_LOG=/opt/osg-1.2.6/glite/log
OSG_SITE_WRITE=UNAVAILABLE
GLOBUS_GATEKEEPER_CONTACT_STRING=heroatlas.fas.harvard.edu:2119:/DC=org/DC=doegrids/OU=Services/CN=heroatlas.fas.harvard.edu
SRM_CONFIG=/opt/osg-1.2.6/srm-client-fermi/etc/config-2.xml
USER=dbox
LS_COLORS=no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:ex=01;32:*.cmd=01;32:*.exe=01;32:*.com=01;32:*.btm=01;32:*.bat=01;32:*.sh=01;32:*.csh=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.bz=01;31:*.tz=01;31:*.rpm=01;31:*.cpio=01;31:*.jpg=01;35:*.gif=01;35:*.bmp=01;35:*.xbm=01;35:*.xpm=01;35:*.png=01;35:*.tif=01;35:
LD_LIBRARY_PATH=/opt/osg-1.2.6/subversion/lib:/opt/osg-1.2.6/apache/lib:/opt/osg-1.2.6/MonaLisa/Service/VDTFarm/pgsql/lib:/opt/osg-1.2.6/prima/lib:/opt/osg-1.2.6/curl/lib:/opt/osg-1.2.6/glite/lib64:/opt/osg-1.2.6/glite/lib:/opt/osg-1.2.6/jdk1.6/jre/lib/i386:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/server:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/client:/opt/osg-1.2.6/mysql5/lib/mysql:/opt/osg-1.2.6/globus/lib:/opt/osg-1.2.6/berkeley-db/lib:/opt/osg-1.2.6/expat/lib:/opt/osg-1.2.6/subversion/lib:/opt/osg-1.2.6/apache/lib:/opt/osg-1.2.6/MonaLisa/Service/VDTFarm/pgsql/lib:/opt/osg-1.2.6/prima/lib:/opt/osg-1.2.6/curl/lib:/opt/osg-1.2.6/glite/lib64:/opt/osg-1.2.6/glite/lib:/opt/osg-1.2.6/jdk1.6/jre/lib/i386:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/server:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/client:/opt/osg-1.2.6/mysql5/lib/mysql:/opt/osg-1.2.6/berkeley-db/lib:/opt/osg-1.2.6/expat/lib:/lsf/7.0/linux2.6-glibc2.3-x86_64/lib:
GLOBUS_ERROR_VERBOSE=true
SBD_KRB5CCNAME_VAL=
GPT_LOCATION=/opt/osg-1.2.6/gpt
LSB_EEXEC_REAL_UID=
OSG_LOCATION=/opt/osg-1.2.6
GLITE_LOCATION_TMP=/opt/osg-1.2.6/glite/tmp
HOSTTYPE=X86_64
ATLAS_LOCAL_AREA=/n/data1/ATLAS/osg/app/atlas_app/local
KDEDIR=/usr
REMOTE_HOST=131.225.67.70
LSF_INVOKE_CMD=bsub
OSG_SITE_READ=UNAVAILABLE
LIBPATH=/opt/osg-1.2.6/globus/lib:/usr/lib:/lib
LS_EXEC_T=START
GLOBUS_OPTIONS=-Xms256M -Xmx1024M
LSF_EAUTH_SERVER=mbatchd@lsf-odyssey
LSF_VERSION=23
LS_SUBCWD=/n/home11/dbox/
GLOBUS_GRAM_MYJOB_CONTACT=URLx-nexus://heroatlas.fas.harvard.edu:50915/
LSB_UNIXGROUP_INT=feldman_lab
LSB_HOSTS=atlas5415
LSB_DJOB_RU_INTERVAL=30
X509_CADIR=/opt/osg-1.2.6/globus/TRUSTED_CA
LSB_JOBFILENAME=/n/home11/dbox/.lsbatch/1363386423.56878668
LSB_DJOB_HB_INTERVAL=30
PATH=/lsf/7.0/linux2.6-glibc2.3-x86_64/bin:/lsf/7.0/linux2.6-glibc2.3-x86_64/etc:/opt/osg-1.2.6/osg/bin:/opt/osg-1.2.6/osg/bin:/opt/osg-1.2.6/bwctl/bin:/opt/osg-1.2.6/owamp/bin:/opt/osg-1.2.6/npad/bin:/opt/osg-1.2.6/ndt/bin:/opt/osg-1.2.6/subversion/bin:/opt/osg-1.2.6/apache/bin:/opt/osg-1.2.6/dccp/bin:/opt/osg-1.2.6/condor-cron/wrappers:/opt/osg-1.2.6/srm-client-lbnl/bin:/opt/osg-1.2.6/srm-client-fermi/sbin:/opt/osg-1.2.6/srm-client-fermi/bin:/opt/osg-1.2.6/gums/scripts:/opt/osg-1.2.6/cert-scripts/bin:/opt/osg-1.2.6/edg/sbin:/opt/osg-1.2.6/gip/bin:/opt/osg-1.2.6/prima/bin:/opt/osg-1.2.6/curl/bin:/opt/osg-1.2.6/glite/sbin:/opt/osg-1.2.6/glite/bin:/opt/osg-1.2.6/ant/bin:/opt/osg-1.2.6/jdk1.6/bin:/opt/osg-1.2.6/mysql5/bin:/opt/osg-1.2.6/wget/bin:/opt/osg-1.2.6/logrotate/sbin:/opt/osg-1.2.6/gpt/sbin:/opt/osg-1.2.6/globus/bin:/opt/osg-1.2.6/globus/sbin:/opt/pacman-3.29/bin:/opt/osg-1.2.6/vdt/sbin:/opt/osg-1.2.6/vdt/bin:/opt/osg-1.2.6/osg/bin:/opt/osg-1.2.6/osg/bin:/opt/osg-1.2.6/bwctl/bin:/opt/osg-1.2.6/owamp/bin:/opt/osg-1.2.6/npad/bin:/opt/osg-1.2.6/ndt/bin:/opt/osg-1.2.6/subversion/bin:/opt/osg-1.2.6/apache/bin:/opt/osg-1.2.6/dccp/bin:/opt/osg-1.2.6/condor-cron/wrappers:/opt/osg-1.2.6/srm-client-lbnl/bin:/opt/osg-1.2.6/srm-client-fermi/sbin:/opt/osg-1.2.6/srm-client-fermi/bin:/opt/osg-1.2.6/gums/scripts:/opt/osg-1.2.6/cert-scripts/bin:/opt/osg-1.2.6/edg/sbin:/opt/osg-1.2.6/gip/bin:/opt/osg-1.2.6/prima/bin:/opt/osg-1.2.6/curl/bin:/opt/osg-1.2.6/glite/sbin:/opt/osg-1.2.6/glite/bin:/opt/osg-1.2.6/ant/bin:/opt/osg-1.2.6/jdk1.6/bin:/opt/osg-1.2.6/mysql5/bin:/opt/osg-1.2.6/wget/bin:/opt/osg-1.2.6/logrotate/sbin:/opt/osg-1.2.6/gpt/sbin:/opt/pacman-3.29/bin:/opt/osg-1.2.6/vdt/sbin:/opt/osg-1.2.6/vdt/bin:/sbin:/usr/sbin:/bin:/usr/bin
LSB_JOBINDEX=0
LC_MESSAGES=en_US
LOGIN=dbox
LSB_EXIT_PRE_ABORT=99
OSG_DATA=/n/data1/ATLAS/osg/data
VDT_LOCATION=/opt/osg-1.2.6
EDG_LOCATION=/opt/osg-1.2.6/edg
LC_COLLATE=en_US
LSB_JOBEXIT_STAT=0
OSG_APP=/n/data1/ATLAS/osg/app
INPUTRC=/etc/inputrc
PWD=/n/home11/dbox
JAVA_HOME=/opt/osg-1.2.6/jdk1.6
KDE_IS_PRELINKED=1
LANG=en_US
GRID3_TMP_DIR=/n/data1/ATLAS/osg/data
MODULEPATH=/n/sw/odyssey-apps/modules-3.2.6/Modules/modulefiles:/n/sw/odyssey-apps/modules-3.2.6/Modules/modulefiles:
VOMS_LOCATION=/opt/osg-1.2.6/glite
LSF_EAUTH_CLIENT=user
LSB_CHKFILENAME=/n/home11/dbox/.lsbatch/1363386423.56878668
GLOBUS_ID=/DC=org/DC=doegrids/OU=Services/CN=gfactory/gpsn01.fnal.gov
LOADEDMODULES=
LSB_DJOB_HOSTFILE=/n/home11/dbox/.lsbatch/1363386423.56878668.hostfile
GATEKEEPER_JM_ID=2013-03-15.18:27:02.0000032520.0000000000
OSG_GRID=/n/data1/ATLAS/osg/wn-client
CATALINA_OPTS=-Dorg.globus.wsrf.container.persistence.dir=/opt/osg-1.2.6/vdt-app-data/globus/persisted
MonaLisa_HOME=/opt/osg-1.2.6/MonaLisa
GLOBUS_SPOOL_DIR=/opt/osg-1.2.6/globus/tmp/gram_job_state
LSF_BINDIR=/lsf/7.0/linux2.6-glibc2.3-x86_64/bin
LSB_EXEC_HOSTTYPE=X86_64
LSB_DJOB_NUMPROC=1
GRID3_APP_DIR=/n/data1/ATLAS/osg/app
GRID3_SITE_NAME=HU_ATLAS_Tier2
OSG_HOSTNAME=heroatlas.fas.harvard.edu
SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass
SHLVL=9
GLITE_LOCATION_VAR=/opt/osg-1.2.6/glite/var
HOME=/n/home11/dbox
OSG_STORAGE_ELEMENT=True
X509_USER_PROXY=/n/home11/dbox/.globus/job/heroatlas.fas.harvard.edu/335.1363386422/x509_up
GRID_SECURITY_HTTP_BODY_FD=7
GATEKEEPER_ACCT_FD=4
BINARY_TYPE_HPC=
LSB_ACCT_FILE=/tmp/.1363386423.56878668.acct
DYLD_LIBRARY_PATH=/opt/osg-1.2.6/globus/lib
VDT_INSTALL_LOG=vdt-install.log
LSB_SUB_HOST=heroatlas
OSG_DEFAULT_SE=heroatlas.fas.harvard.edu
LSFUSER=dbox
LSB_SUB_USER=dbox
GRID_AUTH_METHOD=TO_FILLED_IN_LATER
LOGNAME=dbox
PYTHONPATH=/opt/osg-1.2.6/osg/lib/python:/opt/osg-1.2.6/gratia/probe/metric:/opt/osg-1.2.6/gratia/probe/common:/opt/osg-1.2.6/python/lib/python2.4/site-packages:/opt/osg-1.2.6/osg/lib/python:/opt/osg-1.2.6/gratia/probe/metric:/opt/osg-1.2.6/gratia/probe/common:/opt/osg-1.2.6/python/lib/python2.4/site-packages:/opt/osg-1.2.6/osg/lib/python:/opt/osg-1.2.6/gratia/probe/metric:/opt/osg-1.2.6/gratia/probe/common:/opt/osg-1.2.6/python/lib/python2.4/site-packages:
LSB_OUTPUTFILE=/n/home11/dbox/.globus/job/heroatlas.fas.harvard.edu/335.1363386422/stdout
LSB_MCPU_HOSTS=atlas5415 1
LSB_QUEUE=ATLAS_Production
CVS_RSH=ssh
QTLIB=/usr/lib64/qt-3.3/lib
OSG_SITE_NAME=HU_ATLAS_Tier2
XLSF_UIDDIR=/lsf/7.0/linux2.6-glibc2.3-x86_64/lib/uid
GLOBUS_MYSQL_PATH=/opt/osg-1.2.6/mysql5
MODULESHOME=/n/sw/odyssey-apps/modules-3.2.6/Modules
GIP_LOCATION=/opt/osg-1.2.6/gip
LSB_DEFAULTQUEUE=ATLAS_Production
LSB_ECHKPNT_RSH_CMD=ssh -o 'PasswordAuthentication no' -o 'StrictHostKeyChecking no'
LESSOPEN=|/usr/bin/lesspipe.sh %s
OMP_NUM_THREADS=1
GRID_ID=/DC=org/DC=doegrids/OU=Services/CN=gfactory/gpsn01.fnal.gov
SHLIB_PATH=/opt/osg-1.2.6/globus/lib
VDT_POSTINSTALL_README=/opt/osg-1.2.6/post-install/README
VO_ATLAS_SW_DIR=/cvmfs/atlas.cern.ch/repo/sw
LSB_EEXEC_REAL_GID=
GLITE_LOCATION=/opt/osg-1.2.6/glite
LSF_ENVDIR=/lsf/conf
GRID3_BASE_DIR=/opt/osg-1.2.6
GLOBUS_GRAM_JOB_CONTACT=https://heroatlas.fas.harvard.edu:46292/335/1363386422/
LC_TIME=en_US
G_BROKEN_FILENAMES=1
PACMAN_LOCATION=/opt/pacman-3.29
PEGASUS_HOME=/opt/osg-1.2.6/pegasus
XAUTHORITY=/root/.xauthyfDBku
CERT_SCRIPTS_HOME=/opt/osg-1.2.6/cert-scripts
module=() { if [ $# -eq 2 ]; then
if [ "$1x" == "loadx" -a -x /usr/local/bin/module_db ]; then
setsid /usr/local/bin/module_db $*;
fi;
fi;
eval `/n/sw/odyssey-apps/modules-3.2.6/Modules/bin/modulecmd bash $*`
}
_=/usr/bin/printenv

------------------------------------------------------------
Sender: LSF System <lsfadmin@atlas5415>
Subject: Job 56878668: <#! /bin/sh;#;# LSF batch job script built by Globus Job Manager;#;#BSUB -i /dev/null;#BSUB -o /n/home11/dbox/.globus/job/heroatlas.fas.harvard.edu/335.1363386422/stdout;#BSUB -e /n/home11/dbox/.globus/job/heroatlas.fas.harvard.edu/335.1363386422/stderr;#BSUB -n 1;HOME="/n/home11/dbox"; export HOME;VO_ATLAS_SW_DIR="/cvmfs/atlas.cern.ch/repo/sw"; export VO_ATLAS_SW_DIR;OSG_DATA="/n/data1/ATLAS/osg/data"; export OSG_DATA;LD_LIBRARY_PATH="/opt/osg-1.2.6/subversion/lib:/opt/osg-1.2.6/apache/lib:/opt/osg-1.2.6/MonaLisa/Service/VDTFarm/pgsql/lib:/opt/osg-1.2.6/prima/lib:/opt/osg-1.2.6/curl/lib:/opt/osg-1.2.6/glite/lib64:/opt/osg-1.2.6/glite/lib:/opt/osg-1.2.6/jdk1.6/jre/lib/i386:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/server:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/client:/opt/osg-1.2.6/mysql5/lib/mysql:/opt/osg-1.2.6/globus/lib:/opt/osg-1.2.6/berkeley-db/lib:/opt/osg-1.2.6/expat/lib:/opt/osg-1.2.6/subversion/lib:/opt/osg-1.2.6/apache/lib:/opt/osg-1.2.6/MonaLisa/Service/VDTFarm/pgsql/lib:/opt/osg-1.2.6/prima/lib:/opt/osg-1.2.6/curl/lib:/opt/osg-1.2.6/glite/lib64:/opt/osg-1.2.6/glite/lib:/opt/osg-1.2.6/jdk1.6/jre/lib/i386:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/server:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/client:/opt/osg-1.2.6/mysql5/lib/mysql:/opt/osg-1.2.6/berkeley-db/lib:/opt/osg-1.2.6/expat/lib:/lsf/7.0/linux2.6-glibc2.3-x86_64/lib"; export LD_LIBRARY_PATH;ATLAS_LOCAL_AREA="/n/data1/ATLAS/osg/app/atlas_app/local"; export ATLAS_LOCAL_AREA;OSG_GLEXEC_LOCATION="UNAVAILABLE"; export OSG_GLEXEC_LOCATION;GRID3_TMP_WN_DIR="/scratch"; export GRID3_TMP_WN_DIR;GRID3_TMP_DIR="/n/data1/ATLAS/osg/data"; export GRID3_TMP_DIR;OSG_LOCATION="/opt/osg-1.2.6"; export OSG_LOCATION;OSG_HOSTNAME="heroatlas.fas.harvard.edu"; export OSG_HOSTNAME;OSG_STORAGE_ELEMENT="True"; export OSG_STORAGE_ELEMENT;OSG_JOB_CONTACT="heroatlas.fas.harvard.edu/jobmanager-lsf"; export OSG_JOB_CONTACT;GRID3_SITE_NAME="HU_ATLAS_Tier2"; export GRID3_SITE_NAME;OSG_APP="/n/data1/ATLAS/osg/app"; export OSG_APP;GRID3_BASE_DIR="/opt/osg-1.2.6"; export GRID3_BASE_DIR;GRID3_DATA_DIR="/n/data1/ATLAS/osg/data"; export GRID3_DATA_DIR;OSG_DEFAULT_SE="heroatlas.fas.harvard.edu"; export OSG_DEFAULT_SE;OSG_GRID="/n/data1/ATLAS/osg/wn-client"; export OSG_GRID;LOGNAME="dbox"; export LOGNAME;OSG_SQUID_LOCATION="UNAVAILABLE"; export OSG_SQUID_LOCATION;GLOBUS_GRAM_JOB_CONTACT="https://heroatlas.fas.harvard.edu:46292/335/1363386422/"; export GLOBUS_GRAM_JOB_CONTACT;GLOBUS_LOCATION="/n/data1/ATLAS/osg/wn-client/globus"; export GLOBUS_LOCATION;OSG_SITE_NAME="HU_ATLAS_Tier2"; export OSG_SITE_NAME;GLOBUS_GRAM_MYJOB_CONTACT="URLx-nexus://heroatlas.fas.harvard.edu:50915/"; export GLOBUS_GRAM_MYJOB_CONTACT;OSG_SITE_WRITE="UNAVAILABLE"; export OSG_SITE_WRITE;GRID3_APP_DIR="/n/data1/ATLAS/osg/app"; export GRID3_APP_DIR;OSG_WN_TMP="/scratch"; export OSG_WN_TMP;X509_USER_PROXY="/n/home11/dbox/.globus/job/heroatlas.fas.harvard.edu/335.1363386422/x509_up"; export X509_USER_PROXY;OSG_SITE_READ="UNAVAILABLE"; export OSG_SITE_READ; if test 'X${LD_LIBRARY_PATH}' != 'X'; then; LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:"; else; LD_LIBRARY_PATH=""; fi; export LD_LIBRARY_PATH; #Change to directory requested by user;cd /n/home11/dbox;pids='';exit_code=0;/usr/bin/printenv & pids="$pids $!"; for x in $pids; do; wait $x; tmp_exit_code=$?; if [ $exit_code = 0 -a $tmp_exit_code != 0 ]; then; exit_code=$tmp_exit_code; fi; done; exit $exit_code> in cluster lsf-odyssey Done

Job <#! /bin/sh;#;# LSF batch job script built by Globus Job Manager;#;#BSUB -i /dev/null;#BSUB -o /n/home11/dbox/.globus/job/heroatlas.fas.harvard.edu/335.1363386422/stdout;#BSUB -e /n/home11/dbox/.globus/job/heroatlas.fas.harvard.edu/335.1363386422/stderr;#BSUB -n 1;HOME="/n/home11/dbox"; export HOME;VO_ATLAS_SW_DIR="/cvmfs/atlas.cern.ch/repo/sw"; export VO_ATLAS_SW_DIR;OSG_DATA="/n/data1/ATLAS/osg/data"; export OSG_DATA;LD_LIBRARY_PATH="/opt/osg-1.2.6/subversion/lib:/opt/osg-1.2.6/apache/lib:/opt/osg-1.2.6/MonaLisa/Service/VDTFarm/pgsql/lib:/opt/osg-1.2.6/prima/lib:/opt/osg-1.2.6/curl/lib:/opt/osg-1.2.6/glite/lib64:/opt/osg-1.2.6/glite/lib:/opt/osg-1.2.6/jdk1.6/jre/lib/i386:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/server:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/client:/opt/osg-1.2.6/mysql5/lib/mysql:/opt/osg-1.2.6/globus/lib:/opt/osg-1.2.6/berkeley-db/lib:/opt/osg-1.2.6/expat/lib:/opt/osg-1.2.6/subversion/lib:/opt/osg-1.2.6/apache/lib:/opt/osg-1.2.6/MonaLisa/Service/VDTFarm/pgsql/lib:/opt/osg-1.2.6/prima/lib:/opt/osg-1.2.6/curl/lib:/opt/osg-1.2.6/glite/lib64:/opt/osg-1.2.6/glite/lib:/opt/osg-1.2.6/jdk1.6/jre/lib/i386:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/server:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/client:/opt/osg-1.2.6/mysql5/lib/mysql:/opt/osg-1.2.6/berkeley-db/lib:/opt/osg-1.2.6/expat/lib:/lsf/7.0/linux2.6-glibc2.3-x86_64/lib"; export LD_LIBRARY_PATH;ATLAS_LOCAL_AREA="/n/data1/ATLAS/osg/app/atlas_app/local"; export ATLAS_LOCAL_AREA;OSG_GLEXEC_LOCATION="UNAVAILABLE"; export OSG_GLEXEC_LOCATION;GRID3_TMP_WN_DIR="/scratch"; export GRID3_TMP_WN_DIR;GRID3_TMP_DIR="/n/data1/ATLAS/osg/data"; export GRID3_TMP_DIR;OSG_LOCATION="/opt/osg-1.2.6"; export OSG_LOCATION;OSG_HOSTNAME="heroatlas.fas.harvard.edu"; export OSG_HOSTNAME;OSG_STORAGE_ELEMENT="True"; export OSG_STORAGE_ELEMENT;OSG_JOB_CONTACT="heroatlas.fas.harvard.edu/jobmanager-lsf"; export OSG_JOB_CONTACT;GRID3_SITE_NAME="HU_ATLAS_Tier2"; export GRID3_SITE_NAME;OSG_APP="/n/data1/ATLAS/osg/app"; export OSG_APP;GRID3_BASE_DIR="/opt/osg-1.2.6"; export GRID3_BASE_DIR;GRID3_DATA_DIR="/n/data1/ATLAS/osg/data"; export GRID3_DATA_DIR;OSG_DEFAULT_SE="heroatlas.fas.harvard.edu"; export OSG_DEFAULT_SE;OSG_GRID="/n/data1/ATLAS/osg/wn-client"; export OSG_GRID;LOGNAME="dbox"; export LOGNAME;OSG_SQUID_LOCATION="UNAVAILABLE"; export OSG_SQUID_LOCATION;GLOBUS_GRAM_JOB_CONTACT="https://heroatlas.fas.harvard.edu:46292/335/1363386422/"; export GLOBUS_GRAM_JOB_CONTACT;GLOBUS_LOCATION="/n/data1/ATLAS/osg/wn-client/globus"; export GLOBUS_LOCATION;OSG_SITE_NAME="HU_ATLAS_Tier2"; export OSG_SITE_NAME;GLOBUS_GRAM_MYJOB_CONTACT="URLx-nexus://heroatlas.fas.harvard.edu:50915/"; export GLOBUS_GRAM_MYJOB_CONTACT;OSG_SITE_WRITE="UNAVAILABLE"; export OSG_SITE_WRITE;GRID3_APP_DIR="/n/data1/ATLAS/osg/app"; export GRID3_APP_DIR;OSG_WN_TMP="/scratch"; export OSG_WN_TMP;X509_USER_PROXY="/n/home11/dbox/.globus/job/heroatlas.fas.harvard.edu/335.1363386422/x509_up"; export X509_USER_PROXY;OSG_SITE_READ="UNAVAILABLE"; export OSG_SITE_READ; if test 'X${LD_LIBRARY_PATH}' != 'X'; then; LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:"; else; LD_LIBRARY_PATH=""; fi; export LD_LIBRARY_PATH; #Change to directory requested by user;cd /n/home11/dbox;pids='';exit_code=0;/usr/bin/printenv & pids="$pids $!"; for x in $pids; do; wait $x; tmp_exit_code=$?; if [ $exit_code = 0 -a $tmp_exit_code != 0 ]; then; exit_code=$tmp_exit_code; fi; done; exit $exit_code> was submitted from host <heroatlas> by user <dbox> in cluster <lsf-odyssey>.
Job was executed on host(s) <atlas5415>, in queue <ATLAS_Production>, as user <dbox> in cluster <lsf-odyssey>.
</n/home11/dbox> was used as the home directory.
</n/home11/dbox> was used as the working directory.
Started at Fri Mar 15 19:40:08 2013
Results reported at Fri Mar 15 19:40:10 2013

Your job looked like:


  1. LSBATCH: User input
    #! /bin/sh #
  2. LSF batch job script built by Globus Job Manager #
    #BSUB -i /dev/null
    #BSUB -o /n/home11/dbox/.globus/job/heroatlas.fas.harvard.edu/335.1363386422/stdout
    #BSUB -e /n/home11/dbox/.globus/job/heroatlas.fas.harvard.edu/335.1363386422/stderr
    #BSUB -n 1
    HOME="/n/home11/dbox"; export HOME
    VO_ATLAS_SW_DIR="/cvmfs/atlas.cern.ch/repo/sw"; export VO_ATLAS_SW_DIR
    OSG_DATA="/n/data1/ATLAS/osg/data"; export OSG_DATA
    LD_LIBRARY_PATH="/opt/osg-1.2.6/subversion/lib:/opt/osg-1.2.6/apache/lib:/opt/osg-1.2.6/MonaLisa/Service/VDTFarm/pgsql/lib:/opt/osg-1.2.6/prima/lib:/opt/osg-1.2.6/curl/lib:/opt/osg-1.2.6/glite/lib64:/opt/osg-1.2.6/glite/lib:/opt/osg-1.2.6/jdk1.6/jre/lib/i386:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/server:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/client:/opt/osg-1.2.6/mysql5/lib/mysql:/opt/osg-1.2.6/globus/lib:/opt/osg-1.2.6/berkeley-db/lib:/opt/osg-1.2.6/expat/lib:/opt/osg-1.2.6/subversion/lib:/opt/osg-1.2.6/apache/lib:/opt/osg-1.2.6/MonaLisa/Service/VDTFarm/pgsql/lib:/opt/osg-1.2.6/prima/lib:/opt/osg-1.2.6/curl/lib:/opt/osg-1.2.6/glite/lib64:/opt/osg-1.2.6/glite/lib:/opt/osg-1.2.6/jdk1.6/jre/lib/i386:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/server:/opt/osg-1.2.6/jdk1.6/jre/lib/i386/client:/opt/osg-1.2.6/mysql5/lib/mysql:/opt/osg-1.2.6/berkeley-db/lib:/opt/osg-1.2.6/expat/lib:/lsf/7.0/linux2.6-glibc2.3-x86_64/lib"; export LD_LIBRARY_PATH
    ATLAS_LOCAL_AREA="/n/data1/ATLAS/osg/app/atlas_app/local"; export ATLAS_LOCAL_AREA
    OSG_GLEXEC_LOCATION="UNAVAILABLE"; export OSG_GLEXEC_LOCATION
    GRID3_TMP_WN_DIR="/scratch"; export GRID3_TMP_WN_DIR
    GRID3_TMP_DIR="/n/data1/ATLAS/osg/data"; export GRID3_TMP_DIR
    OSG_LOCATION="/opt/osg-1.2.6"; export OSG_LOCATION
    OSG_HOSTNAME="heroatlas.fas.harvard.edu"; export OSG_HOSTNAME
    OSG_STORAGE_ELEMENT="True"; export OSG_STORAGE_ELEMENT
    OSG_JOB_CONTACT="heroatlas.fas.harvard.edu/jobmanager-lsf"; export OSG_JOB_CONTACT
    GRID3_SITE_NAME="HU_ATLAS_Tier2"; export GRID3_SITE_NAME
    OSG_APP="/n/data1/ATLAS/osg/app"; export OSG_APP
    GRID3_BASE_DIR="/opt/osg-1.2.6"; export GRID3_BASE_DIR
    GRID3_DATA_DIR="/n/data1/ATLAS/osg/data"; export GRID3_DATA_DIR
    OSG_DEFAULT_SE="heroatlas.fas.harvard.edu"; export OSG_DEFAULT_SE
    OSG_GRID="/n/data1/ATLAS/osg/wn-client"; export OSG_GRID
    LOGNAME="dbox"; export LOGNAME
    OSG_SQUID_LOCATION="UNAVAILABLE"; export OSG_SQUID_LOCATION
    GLOBUS_GRAM_JOB_CONTACT="https://heroatlas.fas.harvard.edu:46292/335/1363386422/"; export GLOBUS_GRAM_JOB_CONTACT
    GLOBUS_LOCATION="/n/data1/ATLAS/osg/wn-client/globus"; export GLOBUS_LOCATION
    OSG_SITE_NAME="HU_ATLAS_Tier2"; export OSG_SITE_NAME
    GLOBUS_GRAM_MYJOB_CONTACT="URLx-nexus://heroatlas.fas.harvard.edu:50915/"; export GLOBUS_GRAM_MYJOB_CONTACT
    OSG_SITE_WRITE="UNAVAILABLE"; export OSG_SITE_WRITE
    GRID3_APP_DIR="/n/data1/ATLAS/osg/app"; export GRID3_APP_DIR
    OSG_WN_TMP="/scratch"; export OSG_WN_TMP
    X509_USER_PROXY="/n/home11/dbox/.globus/job/heroatlas.fas.harvard.edu/335.1363386422/x509_up"; export X509_USER_PROXY
    OSG_SITE_READ="UNAVAILABLE"; export OSG_SITE_READ
if test 'X${LD_LIBRARY_PATH}' != 'X'; then
LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:"
else
LD_LIBRARY_PATH=""
fi
export LD_LIBRARY_PATH

#Change to directory requested by user
cd /n/home11/dbox
pids=''
exit_code=0
/usr/bin/printenv &

(... more ...)
------------------------------------------------------------

Successfully completed.

Resource usage summary:

CPU time   :      0.03 sec.
Max Memory : 2 MB
Max Swap : 30 MB
Max Processes  :         1
Max Threads : 1

The output (if any) is above this job summary.

PS:

Read file </n/home11/dbox/.globus/job/heroatlas.fas.harvard.edu/335.1363386422/stderr> for stderr output of this job.

You have new mail in /var/spool/mail/gfactory
[gfactory@gpsn01 entry_HARVARD_nova]$

#5 Updated by Dennis Box over 6 years ago

This update was on the wrong ticket, happy monday.
Dennis

#6 Updated by Dennis Box over 6 years ago

  • Status changed from New to Closed

use group_q (experiment) command to do this, available in v1_2_rc3



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