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Bug #3538

read params broken

Added by Brian Nord over 6 years ago. Updated over 6 years ago.

Status:
Closed
Priority:
Normal
Assignee:
-
Category:
-
Target version:
-
Start date:
02/26/2013
Due date:
% Done:

0%

Estimated time:
Duration:

Description

┌(bnord@cerebro1)─(✗)─(12:10 PM Tue Feb 26)
└─(~/Cosmo/Projects/spokes/despec/Wrapper)─(8 files, 72b)─> python run_pipeline.py
=======================***
Running pipeline *** =======================***

... entered readParams
... Reading Param File for Convert
... Reading Param File for Target_Selection
Traceback (most recent call last):
File "run_pipeline.py", line 129, in <module>
readParams(config)
File "run_pipeline.py", line 63, in readParams
ar["/" + section + "/" + option] = eval(param.get(section, option))
File "/Users/bnord/Cosmo/Projects/spokes/despec/Wrapper/archive.py", line 53, in setitem
self.file.createArray(group, segments[-1], value)
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/tables/file.py", line 780, in createArray
object=object, title=title, byteorder=byteorder)
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/tables/array.py", line 167, in init
byteorder, log)
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/tables/leaf.py", line 263, in init
super(Leaf, self).
_init__(parentNode, name, _log)
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/tables/node.py", line 250, in init
self._v_objectID = self._g_create()
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/tables/array.py", line 200, in _g_create
nparr, self._v_new_title, self.atom)
File "hdf5Extension.pyx", line 884, in tables.hdf5Extension.Array._createArray (tables/hdf5Extension.c:8498)
tables.exceptions.HDF5ExtError: Problems creating the Array.

History

#1 Updated by Laurenz Gamper over 6 years ago

  • Status changed from New to Closed

It seems to happen when the data bank h5 file is broken. I was able to repair it by copying the clean data bank into the data bank.



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